BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0002.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312842|ref|YP_003776934.1| chloramphenicol-sensitive prote...   308   2e-85
gi|300313990|ref|YP_003778082.1| permease [Herbaspirillum serope...    61   7e-11

>gi|300312842|ref|YP_003776934.1| chloramphenicol-sensitive protein
           [Herbaspirillum seropedicae SmR1]
          Length = 300

 Score =  308 bits (790), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 181/227 (79%), Positives = 208/227 (91%)

Query: 2   AELLASPGRIALLVLMAALLALQQWLFLWGSVNGRALEVSLGYFMLPLSMVLVGRFHYGE 61
           AELL SPGR  LL+LMAALL  QQWLFLWGSVNG+ALEVSLGYF+LPLSMVLVGR  YGE
Sbjct: 71  AELLGSPGRCLLLLLMAALLGFQQWLFLWGSVNGQALEVSLGYFLLPLSMVLVGRLLYGE 130

Query: 62  KMDLLQRLAVLCACVGVAHELWMTRAFSWPTLAVALGYPPYFMLRRRIRLDSMLIFAVEL 121
           +++LLQRLAVL AC+GVAHE+WMTR+FSWPTLAVALGYPPYF+LRRR++LDS++IFAVEL
Sbjct: 131 RLNLLQRLAVLLACIGVAHEIWMTRSFSWPTLAVALGYPPYFILRRRLQLDSLMIFAVEL 190

Query: 122 MVLALPSLLALVLSPATGPTLRTPAMWLLLPGLGILSMIALASYLRAGKLLPMGLFGILG 181
           ++LALP+L+A+ L      TLRTPAM LLLPGLG+LSM+ALA YLRAGKLLPMGLFG+LG
Sbjct: 191 LILALPALIAVALGDTLATTLRTPAMLLLLPGLGLLSMVALACYLRAGKLLPMGLFGVLG 250

Query: 182 YVEPVLLVLVAMAVLGESLQLAQLGTYVPIWLSVLLTALHSVKLMRR 228
           YVEP+LLVLVA+AVLGESL LAQLGTYVPIWL+VLLTA+HS KLMR+
Sbjct: 251 YVEPILLVLVAIAVLGESLPLAQLGTYVPIWLAVLLTAMHSAKLMRQ 297


>gi|300313990|ref|YP_003778082.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 298

 Score = 61.2 bits (147), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 10/204 (4%)

Query: 16  LMAALLALQQW-LFLWGSVNGRALEVSLGYFMLPLSMVLVGRFHYGEKMDLLQRLAVLCA 74
           L++ALL    W L++W    GR ++ SLGYFM PL  V +G     E+M  LQ LAV  A
Sbjct: 68  LLSALLLTGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKERMRPLQWLAVFLA 127

Query: 75  CVGVAHELWMTRAFS---WPTLAVALGYPPYFMLRRRIRLDSMLIFAVE---LMVLALPS 128
              V   +W+T A     W +L +AL +  Y +LR+   L ++   ++E   ++ L L  
Sbjct: 128 LGAV---IWLTIANGSLPWVSLLIALSFAFYGLLRKTAHLGALEGLSLETLLMLPLVLLV 184

Query: 129 LLALVLSPATGPTLRTPAMWLLLPGLGILSMIALASYLRAGKLLPMGLFGILGYVEPVLL 188
           L    L  +   T  + +  +LL   G ++ + L  +    + +P+ + G++ Y+ P + 
Sbjct: 185 LGVDTLRDSNAFTHASTSARILLALSGPITAVPLLLFAHGARRIPLSMLGLMQYISPTIQ 244

Query: 189 VLVAMAVLGESLQLAQLGTYVPIW 212
           +L  + + GE+   A+   +  IW
Sbjct: 245 LLGGVLIYGEAFTGARAIGFCVIW 268


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.143    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 612,020
Number of extensions: 21437
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)