BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0177.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310758|ref|YP_003774850.1| UDP-N-acetylenolpyruvoylglucosa...   610   e-176

>gi|300310758|ref|YP_003774850.1|
           UDP-N-acetylenolpyruvoylglucosamine reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  610 bits (1572), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 295/343 (86%), Positives = 321/343 (93%)

Query: 1   MSTSSLPVRHDVSLRALNTFGIEASAHAYLPVEGIEQLRTVRQDAGLMALPRLVLGGGSN 60
           M+TSSLP+++ VSL  LNTFG++A A+AYLPV+G + L  +RQDA LMALPRLVLGGGSN
Sbjct: 1   MTTSSLPLQYAVSLAGLNTFGLQAQAYAYLPVQGADTLHALRQDAALMALPRLVLGGGSN 60

Query: 61  LLLTQDFSGLVLHMQNRGIDIAGEDDNFIYVRAAAGENWHAFVQWTLQQDLGGLENLSLI 120
           LLLTQDF GLVLHMQ RG+ I GED++FIYV AAAGENWH FVQWTL Q LGGLENLSLI
Sbjct: 61  LLLTQDFPGLVLHMQGRGMTITGEDEDFIYVCAAAGENWHGFVQWTLAQGLGGLENLSLI 120

Query: 121 PGSVGAAPIQNIGAYGIEIKDRFHSLLAFDLISGELLTLDREACRFGYRDSVFKHALRDR 180
           PGSVGAAPIQNIGAYGIE+KDRFHSL AFDL +GE+LTLDR+ACRFGYRDSVFKHALRDR
Sbjct: 121 PGSVGAAPIQNIGAYGIEVKDRFHSLRAFDLATGEILTLDRDACRFGYRDSVFKHALRDR 180

Query: 181 AVVLEVTFALPKRWEANANYADVAQALQERGITEPGPRDIAEAVIAIRTRKLPDPARIGN 240
           AVVLEV+FALPKRW+ANANYADVAQALQERG+TEPGP DIAEAVIAIRTRKLPDPA+IGN
Sbjct: 181 AVVLEVSFALPKRWQANANYADVAQALQERGVTEPGPGDIAEAVIAIRTRKLPDPAQIGN 240

Query: 241 AGSFFKNPIVPARLRDTLLAQYSNLVSYRVDEDHYKLAAGWLIDRCGWKGKTMGRAGVYE 300
           AGSFFKNPIVPARLRDTLLAQY++LVSYRVDE HYKLAAGWLIDR GWKGKT+GRAGVYE
Sbjct: 241 AGSFFKNPIVPARLRDTLLAQYADLVSYRVDEGHYKLAAGWLIDRSGWKGKTVGRAGVYE 300

Query: 301 QQALVLVNRGGATGAEVARLAKAIQDDVKEKFGVQLEPEPVFI 343
           +QALVLVNRGGATGAEVARLAKAIQ+DVKEKFGVQLEPEPVFI
Sbjct: 301 KQALVLVNRGGATGAEVARLAKAIQEDVKEKFGVQLEPEPVFI 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,138,347
Number of extensions: 50912
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)