BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0170.p (1434 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310753|ref|YP_003774845.1| transmembrane protein [Herbaspi... 2445 0.0 >gi|300310753|ref|YP_003774845.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1439 Score = 2445 bits (6336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1184/1398 (84%), Positives = 1298/1398 (92%), Gaps = 3/1398 (0%) Query: 1 MSQEQHNAAPKPGRWALCWRFARGSYRRLNRATHHVLGFTLKLLLAAYFVFCALFLVLRY 60 MS+E NAA KPGRWALCWR ARGSY RLNRA+HH+LGFT+KLLLA YF+FCALFLVLRY Sbjct: 1 MSEEHDNAAHKPGRWALCWRVARGSYFRLNRASHHLLGFTVKLLLAGYFIFCALFLVLRY 60 Query: 61 AVLPEVGHYKPRIEALISHQLGRTVSIETIDASWSGLRPQLSLTNLTVHDQQGEAALSLP 120 AVLPE+GHYKP+IE L+S Q+GR VSI+ I+ASW GLRPQLSLTN+TVHDQQGE AL+LP Sbjct: 61 AVLPEIGHYKPQIERLVSAQIGRAVSIDVINASWRGLRPQLSLTNITVHDQQGEPALTLP 120 Query: 121 RVSTTLSWSSVLVASLRLENLSIEGADLAIRRDAAGKLYVAGIPVPAGGDGSNLDWLLSQ 180 +VSTTLSWSSV+VASLRLENLSIEGADLAIRRDA GKL+VAGIPVP GGDGS+LDWLLSQ Sbjct: 121 QVSTTLSWSSVVVASLRLENLSIEGADLAIRRDAGGKLFVAGIPVPTGGDGSSLDWLLSQ 180 Query: 181 REIVIRHSKLRWDDELRQAPELVLEDVNLVLHNRWLRHRLSLRAIPPQDMAAPLDVRADF 240 REIVIRHSKLRWDDELRQAPELVLEDVNLVLHNRWLRHRLSLRAIPP AAPLDVRADF Sbjct: 181 REIVIRHSKLRWDDELRQAPELVLEDVNLVLHNRWLRHRLSLRAIPPTSYAAPLDVRADF 240 Query: 241 SHPAFARSSDIARWKGLLYADLRNTELSVWRAWFDYPIAINSGRGSVRAWLTLDHAKVAN 300 SHPAFARSSDI RWKG LYADL+ T+LSVWRA+FDYPIAI SG GSVRAWL LDHAKVAN Sbjct: 241 SHPAFARSSDILRWKGTLYADLQRTDLSVWRAYFDYPIAIQSGTGSVRAWLALDHAKVAN 300 Query: 301 FTADLGLTDFNARLSRQLEPLSLKRVNGRISASETLGPNAEDGVPTFGANGHQVTLTDFS 360 FTADL L +FNA+LSRQLEPLSLKRVNGRISASE+LG EDG+PTFGANGHQVTLTDFS Sbjct: 301 FTADLALNNFNAQLSRQLEPLSLKRVNGRISASESLGATPEDGIPTFGANGHQVTLTDFS 360 Query: 361 IETPDGFVLPPTSIAESYEPATPLKAERTSVKATYLNLQTLSQLATRLPLAPSQRKLLDD 420 IETPDGFVLPPTSIAESYEP TPLKAERTSVKATYLNLQTLSQLATRLPLAPSQRKLLDD Sbjct: 361 IETPDGFVLPPTSIAESYEPGTPLKAERTSVKATYLNLQTLSQLATRLPLAPSQRKLLDD 420 Query: 421 LAPRGELHDFTVQWQGTYPELSSYRVNGRFKGLGLKGLPAHVEPRKNAAQQARAQWAAFP 480 LAPRGEL DFTVQWQGTYPEL+SYRV GRF GLGLKGLPAHVEPR+NAAQQ RAQWA FP Sbjct: 421 LAPRGELRDFTVQWQGTYPELASYRVQGRFSGLGLKGLPAHVEPRRNAAQQVRAQWAGFP 480 Query: 481 GFSNLSGEIDASEKGGSVKVDAQQLAFELPTDLFRESSLPFDSLKLQARWQYLKDQTLQV 540 GFSN+ GEIDA+EKGGSVK+D+Q+LA E+P + F ESS+PFDSLK+QARWQYLKDQTLQV Sbjct: 481 GFSNIDGEIDATEKGGSVKLDSQELAIEMPAEQFVESSMPFDSLKMQARWQYLKDQTLQV 540 Query: 541 DLDQMQFAQPGVAGSLSGQHLLPLQGRSAGSVDLHGELTSFDVKAIRRYLPQHMSEPLHR 600 DL+Q+QFAQPGVAGSLSG+H+ PLQG+SAGSVDLHGEL+ FDVKAIRRYLP+H+SEPL Sbjct: 541 DLEQLQFAQPGVAGSLSGRHVQPLQGKSAGSVDLHGELSRFDVKAIRRYLPRHLSEPLRH 600 Query: 601 WLTEGLLAGNLKEVQFKLKGALADFPFHTTKPGEQPKGVFQLAGEFEGLKLNYTPGHVGR 660 WLT+GL+ G+L++VQF LKGALADFPFHT KPG++PKG FQL+G+FEGLKLNYTPGH+GR Sbjct: 601 WLTDGLVDGSLRDVQFTLKGALADFPFHTAKPGDKPKGQFQLSGDFEGLKLNYTPGHLGR 660 Query: 661 DGKEPEWPLLEEGRGRISVDRTRLEIKADSARTLGARLGPVTARVADVDSHDAVLEIDGV 720 DGKEPEWPLLEEGRG +S+DRTRLEIKADSARTLGA+LGPVTARVADVDSH+A LEI+GV Sbjct: 661 DGKEPEWPLLEEGRGHLSIDRTRLEIKADSARTLGAKLGPVTARVADVDSHEAELEIEGV 720 Query: 721 ANGPMPAFLQYVNQSPVARWTGNVMEHSTATGEARLDLKFQMPLHHAIDTRAQGAFNFAN 780 A+ PM FL+YVNQSPVARWTGN+MEHS+ATGEARLDLKFQMPLHHAIDTRAQGAF+FAN Sbjct: 721 ASAPMAVFLRYVNQSPVARWTGNLMEHSSATGEARLDLKFQMPLHHAIDTRAQGAFHFAN 780 Query: 781 NDVDLLPELPPIYRTSGKVEFNERGFTLNGVRGQFLGDNLAISGGTQKDGSSQVRLDGAI 840 NDVDLLP+LP +YRT+GKVEFNE GFTLNGVRGQFLGD L ISGGTQKDGSSQ+RL+GAI Sbjct: 781 NDVDLLPDLPVLYRTNGKVEFNEHGFTLNGVRGQFLGDALTISGGTQKDGSSQMRLEGAI 840 Query: 841 NIENLRKQYPEPSLQRLLARFSGGTRYSATVLVRQHQPEVTVESSLAGLGVDLPVPLRKG 900 N++ LRKQYPEPSLQRLLAR SG TRY+ATVLVRQHQPEV VESSLAGLGVDLPVPLRK Sbjct: 841 NVDMLRKQYPEPSLQRLLARLSGTTRYNATVLVRQHQPEVVVESSLAGLGVDLPVPLRKS 900 Query: 901 VQDSLPMRFDLLPLASSDPLIEREEMRVSLGSNVASRYVRERVAAKGNEWRVTSGGIGWN 960 Q+SLP+RF+LLPLAS+DPLIEREE++++LGS++ASRYVRERVAA G WRVTSGGIGWN Sbjct: 901 AQESLPLRFELLPLASADPLIEREELKLALGSSIASRYVRERVAATGAAWRVTSGGIGWN 960 Query: 961 QPAPTPASGLKLALATDSLDADAWLALKKDLAGKDAAAAGNGAAAGNRLGNSDVTQYLEP 1020 QPAP+P++GLKLALA DSL+ D WL+LK +L G A A + +AA RLG+ D+ QYL P Sbjct: 961 QPAPSPSAGLKLALAADSLEVDPWLSLKNELVGP--AVAEDASAASTRLGSGDIAQYLAP 1018 Query: 1021 DSVSARVGELNLMGKKLNKLILEAAHRRNAWQINLESQQAAGTVTWDEPGSASGAGKVTA 1080 D VSARVGEL+L GKKLNKLILEAAHRRN+WQI+LESQQ AGTVTWDE G+A G GKVTA Sbjct: 1019 DQVSARVGELSLKGKKLNKLILEAAHRRNSWQISLESQQVAGTVTWDESGAARGPGKVTA 1078 Query: 1081 RLSSLVIPKSSPTADAAPPASADKTDDNLQMPALDIRAEQFELGGKKLGRLELDASNILT 1140 RLSSLVIPKS+PTA+ A+ DD +QMPALDIRAEQFELGGKKLGRLELDASN++T Sbjct: 1079 RLSSLVIPKSTPTAENG-AATVASEDDKVQMPALDIRAEQFELGGKKLGRLELDASNMVT 1137 Query: 1141 SVGREWRISRLLLANPDAQFRAAGNWLTFGSNHTSNFTYALDIEDAGKLLERFGYPGTIR 1200 SVGREWRISRLLLANPDAQFRAAGNW++FGSNHTSNFTYALDIEDAGKLLERFGYPGT+R Sbjct: 1138 SVGREWRISRLLLANPDAQFRAAGNWMSFGSNHTSNFTYALDIEDAGKLLERFGYPGTVR 1197 Query: 1201 GGRGKLDGDLSWKAPPYAMDMATLAGQVHMDVHSGQFLKVDPGAAKLLGVLNLQALPRRL 1260 GG+GKLDGDLSWKAPPYAMDMA+LAGQVHMDVH+GQFLKVDPGAAKLLGVLNLQALPRRL Sbjct: 1198 GGKGKLDGDLSWKAPPYAMDMASLAGQVHMDVHAGQFLKVDPGAAKLLGVLNLQALPRRL 1257 Query: 1261 TLDFRDVFSEGFAFDTVAGTASIAKGIASTDNLKMAGVTASVLMSGSADIARETQDLHVV 1320 TLDFRDVFSEGFAFDTVAGTASI KGIASTDNLKM GVTASVLMSGSADIARETQDLHVV Sbjct: 1258 TLDFRDVFSEGFAFDTVAGTASINKGIASTDNLKMTGVTASVLMSGSADIARETQDLHVV 1317 Query: 1321 VIPEINLGTASVVAMAVNPVVGVSTLLAQLFLRNPVMKSLSFEYKVTGPWSDPIVVKQGQ 1380 VIPEINLGTASVVAMAVNPVVGVSTLLAQLFLRNPVMKSLSFEYKV+G WSDPIVVKQGQ Sbjct: 1318 VIPEINLGTASVVAMAVNPVVGVSTLLAQLFLRNPVMKSLSFEYKVSGSWSDPIVVKQGQ 1377 Query: 1381 VSPVDAERAREVLQKGKG 1398 V+PVD +RARE+L++G+G Sbjct: 1378 VTPVDGQRARELLEQGRG 1395 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 4,337,013 Number of extensions: 185331 Number of successful extensions: 515 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 510 Number of HSP's successfully gapped: 1 Length of query: 1434 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1337 Effective length of database: 1,160,575 Effective search space: 1551688775 Effective search space used: 1551688775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 137 (57.4 bits)