BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0167.p
         (633 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310752|ref|YP_003774844.1| glutamate-ammonia-ligase adenyl...  1140   0.0  

>gi|300310752|ref|YP_003774844.1| glutamate-ammonia-ligase
           adenylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 927

 Score = 1140 bits (2949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/622 (92%), Positives = 594/622 (95%), Gaps = 4/622 (0%)

Query: 1   VASFNMVEEYLVRQGREWERYAWTKARALTGTEEDIATLEAISRPFIFRRYLDFGSIDAL 60
           VASFNMVEEYLVRQGREWERYAWTKARALTGT EDIATLEAISRPFIFRRYLD+GSIDAL
Sbjct: 234 VASFNMVEEYLVRQGREWERYAWTKARALTGTPEDIATLEAISRPFIFRRYLDYGSIDAL 293

Query: 61  RSMHGQIRAEVKRQEALHPDRSNNVKLGRGGIREIEFTSQVFQLIRGGRDAELRDRSTRT 120
           RSMHGQIRAEVKRQEALHPDRSNNVKLGRGGIREIEFTSQVFQLIRGGRDAELRDRSTRT
Sbjct: 294 RSMHGQIRAEVKRQEALHPDRSNNVKLGRGGIREIEFTSQVFQLIRGGRDAELRDRSTRT 353

Query: 121 TLRTLAAKELLAPDVVEQLLDAYTFLRDLEHRLQYLEDAQTHTLPVNPDDLLLVANMMGY 180
           TLRTLAAK+LLAP+VVEQLL AYTFLR+LEHRLQYLEDAQTHTLPVNPDDLLLVA MMGY
Sbjct: 354 TLRTLAAKDLLAPEVVEQLLHAYTFLRNLEHRLQYLEDAQTHTLPVNPDDLLLVARMMGY 413

Query: 181 ADSAALLQALEHQRAIVAAQFDAIFADKQSEGESDGPTVAVSENDNLEGLTDALRLVGFP 240
            + AALL  LE QRAIVAAQFDAIFADKQSE ++DGP+V+VS+NDNLEGL DALRLVGFP
Sbjct: 414 EEPAALLHELERQRAIVAAQFDAIFADKQSEADNDGPSVSVSDNDNLEGLADALRLVGFP 473

Query: 241 EEDIENGARRGARRLHLTWQSPRMQSLPEASRNRLNTVINNCLPLLAALHYDQLPALGRL 300
           E DI +GARR    LHLTWQSPRMQSLPEASRNRLNTVIN  LPLLAALHYDQLPALGRL
Sbjct: 474 EADIADGARR----LHLTWQSPRMQSLPEASRNRLNTVINTSLPLLAALHYDQLPALGRL 529

Query: 301 LDFLEAIARRAAYLALLTEYPYALQRLVRMIGASGWAATYLTRHPLLLDELLDDRNLKAA 360
           LD LEAIARRAAYLALLTEYPYALQRLVRMIGASGWAATYLTRHPLLLDELLDDRNLKAA
Sbjct: 530 LDLLEAIARRAAYLALLTEYPYALQRLVRMIGASGWAATYLTRHPLLLDELLDDRNLKAA 589

Query: 361 SDWNAFADTCRRQLATAEGDTERQLDILRELHHAELFRLLAQDLEGDLSVEKLADELSAL 420
           SDW AFA+ CRRQLATAEGDTERQLDILRELHHAE FRLLAQDLEGDLSVEKLADELSAL
Sbjct: 590 SDWAAFAENCRRQLATAEGDTERQLDILRELHHAEQFRLLAQDLEGDLSVEKLADELSAL 649

Query: 421 ADVLVQVTLEAIWQTIAQRHVEVPRFAVIAYGKLGGKELGYASDLDVVFLYDDEDQEAPG 480
           ADVLVQVT+EA+WQT+AQRH EVP+FAVIAYGKLGGKELGYASDLDVVFLYDDEDQ+APG
Sbjct: 650 ADVLVQVTIEAVWQTVAQRHREVPQFAVIAYGKLGGKELGYASDLDVVFLYDDEDQDAPG 709

Query: 481 LYAKLAQRFITWMTSHTPAGTLFDIDIALRPDGASGLLVSPVSSFEKYQLNAAWIWEHQA 540
           LYAKLAQRFITWMTSHTPAGTLFDIDIALRPDGASGLLVSP+SSFEKYQLNAAWIWEHQA
Sbjct: 710 LYAKLAQRFITWMTSHTPAGTLFDIDIALRPDGASGLLVSPLSSFEKYQLNAAWIWEHQA 769

Query: 541 LTRARFCAGDAAIGERFEALRERVLRQPRDVNKLEEEVLSMRRRMRDAHPNRSMMFDLKH 600
           LTRARFCAGD AIGERFEALRERVLRQPRD  +LEEEVLSMRRRMR+AHPNRS MFDLKH
Sbjct: 770 LTRARFCAGDTAIGERFEALRERVLRQPRDPARLEEEVLSMRRRMREAHPNRSTMFDLKH 829

Query: 601 DEGGMIDIEFMVQYLVLRHACD 622
           DEGGMIDIEFMVQYLVLRHA D
Sbjct: 830 DEGGMIDIEFMVQYLVLRHASD 851



 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 120/255 (47%), Gaps = 27/255 (10%)

Query: 388 LRELHHAELFRLLAQDLEGDLSVEKLADELSALADVLVQVTLEAIWQ--------TIAQR 439
           +R L +  +  L+ +DL+G   ++++   ++  AD  VQ  L A+ Q         I + 
Sbjct: 85  MRRLRNLVICTLITRDLDGRGDLDEVVTTMTGFADFAVQTHLAALMQEQTALYGLPIGEE 144

Query: 440 HVEVPRFAVIAYGKLGGKELGYASDLDVVFLY-DDEDQEAPG---------LYAKLAQRF 489
                   V+  GKLGG EL  +SD+D++F+Y +D D  A            + +L ++ 
Sbjct: 145 SGRPQEMIVLGMGKLGGGELNVSSDIDLIFVYPEDGDTRAEAGQKSLSNHEFFVRLGKKL 204

Query: 490 ITWMTSHTPAGTLFDIDIALRPDGASGLLVSPVSSFEKYQLNAAWIWEHQALTRARFCAG 549
           I  +   T  G  F +D+ALRP+G SG LV+  +  E+Y +     WE  A T+AR   G
Sbjct: 205 IGALAEITEDGFTFRVDMALRPNGNSGPLVASFNMVEEYLVRQGREWERYAWTKARALTG 264

Query: 550 DAAIGERFEAL-RERVLRQPRDVNKLEE------EVLSMRRRMRDAHPNRSMMFDLKHDE 602
                   EA+ R  + R+  D   ++       ++ +  +R    HP+RS   ++K   
Sbjct: 265 TPEDIATLEAISRPFIFRRYLDYGSIDALRSMHGQIRAEVKRQEALHPDRSN--NVKLGR 322

Query: 603 GGMIDIEFMVQYLVL 617
           GG+ +IEF  Q   L
Sbjct: 323 GGIREIEFTSQVFQL 337


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,866,501
Number of extensions: 75076
Number of successful extensions: 238
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 2
Length of query: 633
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 542
Effective length of database: 1,188,985
Effective search space: 644429870
Effective search space used: 644429870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)