BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0157.p (337 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte... 67 3e-12 gi|300312620|ref|YP_003776712.1| ABC transporter periplasmic pro... 64 2e-11 gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate A... 62 5e-11 >gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 94/345 (27%), Positives = 141/345 (40%), Gaps = 27/345 (7%) Query: 1 MKKNNPTAVHDANRRSFIAKAGAVA--ATAAIAGAPAILRAQTVPIRIGYWPVAAGLPFY 58 M N VH A RR+ I + A+A A GA + +T +RIGY A L Sbjct: 1 MSANKNKTVHQARRRA-IQRLSAIALGALTIALGASPVQAQETKLLRIGYQKAANTLVLL 59 Query: 59 AA--VEAGYFKQAGLEVQALKFAGAQQVMEAMLAGRADGSANGTGAGNLAIGEIAQPGLF 116 A + G+EV+ +FA Q++EA+ G D G A A ++ Sbjct: 60 KAHGTLEKRLQPLGVEVKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGAD-FVY 118 Query: 117 KIFATNPSNAKYVLDEFLVPKDSPVKSIADLKGKKVASGPGIQNVTLAKTVLERAGATGA 176 + +A + LV K+SP+KS+A+LKGKK+A G L +L++AG + Sbjct: 119 TAYEIPTPDA----EGLLVQKNSPIKSVAELKGKKIAFNKGSDVHWLVVALLKKAGLQYS 174 Query: 177 TV--VELPIGQHVASLAAGQVDAAYTLEPTGTVGRMNNTTRVLEAGVIAKYILGDPMAPW 234 + V L A+ G VDA +P R L GV A Sbjct: 175 DIQPVYLAPADARAAFERGAVDAWAIWDPFQAAAEKQVGARRLATGVGAVN--------- 225 Query: 235 HGGAAALTTEFIKKNPELARKYIAAYARGIELVRSNPDQARTYLKGYTAIEGSLTNEVPL 294 H F KNP++ + + +R E VR++ QA L ++ + E L Sbjct: 226 HHQFFLSARPFAAKNPQVEKILLEEISREGEWVRTHTAQAAAQLAPIQGLDADII-ETGL 284 Query: 295 AAYMLYNEFKPSD---LAYFQKFYDLFVEKGVFSQRIVVDNLIYK 336 Y + +KP D LA QK D F E + + + V + + K Sbjct: 285 KRYA--HVYKPVDAQVLAEQQKIADAFYELKLIPKPLKVSDAVLK 327 >gi|300312620|ref|YP_003776712.1| ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 333 Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 124/299 (41%), Gaps = 31/299 (10%) Query: 45 RIGYWPVAAGLPFYAAVEAGYFKQAGLEVQALKFAGAQQVMEAMLAGRADGSANGTGAGN 104 +IGY V AA EAG +K+ GL+V+ ++F +++A++ G+ D +G + Sbjct: 29 KIGYLRVMDDAQAMAAYEAGLYKKYGLDVELIEFKSGTDLVKAIVGGQLD---SGVFGFS 85 Query: 105 LAIGEIAQPGLFKIFATNPSNAKYVLDEFLVPKDSPVKSIADLKGKKVASGP--GIQNVT 162 A+ ++ K+ A+ + +DS + +ADLKGK +AS + Sbjct: 86 NAVAWASKGADLKVVG----GAQLGYHALVAREDSGINKVADLKGKTLASQAEGSTADTV 141 Query: 163 LAKTVLERAGATGATVVELPIGQHVA--SLAAGQVDAAYTLEPTGTVGRMNNTTRVLEAG 220 L VL AG V + + VA SL +VDAA+ EP + + L A Sbjct: 142 LKGVVLRDAGIKADDVNVMGVSPQVAVQSLVGKRVDAAFLFEPQARIAQ-------LIAP 194 Query: 221 VIAKYILGDPMAPWHGGAAALTTEFIKKNPELARKYIAAYARGIELVRSNPDQARTYLKG 280 V Y +G+ + P+ + E +KK E K + A I L++ P +A + G Sbjct: 195 VKQVYEIGE-VWPFPCMVVITSGETLKKKREAVWKSLDAQRDAITLLQKKPAEASKLIAG 253 Query: 281 Y--------TAIEGSLTNEVPLAAYMLYNEFKP----SDLAYFQKFYDLFVEKGVFSQR 327 Y T G + E + + F P D Q+ D+ +G R Sbjct: 254 YFIAEPTLKTLKHGEMLREDVIRDAIKSQTFTPKISKKDQDRMQEIADILQSQGSLKTR 312 >gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 113/247 (45%), Gaps = 19/247 (7%) Query: 31 AGAPAILRAQTVPIRIGYWPVAAGLPFYAAVEAGYFKQAGLEVQALKFAGAQQVMEAMLA 90 AGA A+ + + V I +G + LP A + GYFK GL+V+ FAG + ++AM+ Sbjct: 26 AGAQALEKPK-VSIAVGGKNLFYYLPLTIAEQLGYFKDEGLQVEISDFAGGAKALQAMVG 84 Query: 91 GRADGSANGTGAGNLAIGEIAQPGLFKIFATNPSNAKYVLDEFLVPKDSPVKSIADLKGK 150 G AD +G + + QP + + ++ +P K++ADLKGK Sbjct: 85 GSAD-VVSGAYEHTINMQAKNQPIVAFVLQGRAPQIVLAVNNKTMPN---YKTVADLKGK 140 Query: 151 KV-ASGPGIQNVTLAKTVLERAGATGATVVELPIGQHVASLAA---GQVDAAYTLEPTGT 206 K+ + PG +A VL +AG + V + +G +++A GQ+DA L+P + Sbjct: 141 KIGVTAPGSSTSVMASYVLAKAGLKPSDVSFIGVGAAAGAISAVRSGQIDAIANLDPVIS 200 Query: 207 VGRMNNTTRVLEAGVIAK---YILGDPM--APWHGGAAALTTEFIKKNPELARKYIAAYA 261 + + + + K + G PM A + AA FI+K P + A Sbjct: 201 MLEQSKEIKTIADTRTLKDTNDVFGGPMPAATLYAPAA-----FIQKYPNTTQALTNAMV 255 Query: 262 RGIELVR 268 R ++ ++ Sbjct: 256 RALKWIQ 262 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,003,979 Number of extensions: 43017 Number of successful extensions: 212 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 4 Length of query: 337 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 251 Effective length of database: 1,212,660 Effective search space: 304377660 Effective search space used: 304377660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)