BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0153.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310744|ref|YP_003774836.1| ABC transporter periplasmic/sur...   459   e-131
gi|300313552|ref|YP_003777644.1| ABC transporter periplasmic/sur...   141   6e-35

>gi|300310744|ref|YP_003774836.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 365

 Score =  459 bits (1181), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/236 (94%), Positives = 228/236 (96%), Gaps = 7/236 (2%)

Query: 1   MNVGSFFGYIEECEYLS-------SKSKKLAFIAAKPIPQVLRNINAFTLGAQSVDPSIT 53
           MNVGS+FGYIEECEYLS       SKSKKLAFIAAKPIPQVLRNINAFTLGAQSVDP+IT
Sbjct: 130 MNVGSYFGYIEECEYLSGVVAGYMSKSKKLAFIAAKPIPQVLRNINAFTLGAQSVDPAIT 189

Query: 54  CHVIFTGDWSLPVKEAEAANSLIDQGCDVITCHVDGPKVIVETAEKRGIMTTGYHASQAS 113
           CHVIFTGDWSLPVKEAEAANSLIDQGCDVITCHVDGPKVIVETAEKRG+MTTGYHASQAS
Sbjct: 190 CHVIFTGDWSLPVKEAEAANSLIDQGCDVITCHVDGPKVIVETAEKRGVMTTGYHASQAS 249

Query: 114 LAPKGYLTGAEWNWATPYTEIVKATLEGKPMINFLRGGLKDDFVKMSPYGAAVSAPAKKK 173
           LAPKGYLTGAEWNWATPYTEIVKATLEGKPMINFLRGGLKD+FVKMSPYGAAVSAPAKKK
Sbjct: 250 LAPKGYLTGAEWNWATPYTEIVKATLEGKPMINFLRGGLKDNFVKMSPYGAAVSAPAKKK 309

Query: 174 ADEIKAQMLAGKFQIFKGPIKDNKGNTVIPAGTTQVQTDVALEKMNYLVAGVVGQV 229
           ADEIKAQMLAGKFQIFKGPIKDNKGNTVIPAGTTQVQTDV LEKMNYLVAGVVGQV
Sbjct: 310 ADEIKAQMLAGKFQIFKGPIKDNKGNTVIPAGTTQVQTDVVLEKMNYLVAGVVGQV 365


>gi|300313552|ref|YP_003777644.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 379

 Score =  141 bits (355), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 82/212 (38%), Positives = 122/212 (57%), Gaps = 3/212 (1%)

Query: 18  SKSKKLAFIAAKPIPQVLRNINAFTLGAQSVDPSITCHVIFTGDWSLPVKEAEAANSLID 77
           SKS KL  +A+ PIP+V+RNI++FTLGA+SV+P  T  V++   W  P KE EAA +LI 
Sbjct: 169 SKSGKLGVVASVPIPEVIRNIDSFTLGARSVNPKATTAVVWVNKWFDPGKEREAATTLIG 228

Query: 78  QGCDVITCHVDGPKVIVETAEKRGIMTTGYHASQASLAPKGYLTGAEWNWATPYTEIVKA 137
           QG DV+  + D   V V+TA+++G+   G+ +   S  PK +L  +  NW   YT  V+A
Sbjct: 229 QGVDVLMQNTDSAAV-VQTAQEKGVYAFGWDSDMTSFGPKAHLAASVINWGVYYTARVQA 287

Query: 138 TLEGKPMINFLRGGLKDDFVKMSPYGAAVSAPAKKKADEIKAQMLAGKFQIFKGPIKDNK 197
            L+G    +    GLK++ + ++ +   + A  K   +E K  ++ G   I+KGPIKDN 
Sbjct: 288 VLDGSWKSSTSWIGLKENGIDLAAFNPELPADVKTLVEERKKGIVDGSAPIWKGPIKDNA 347

Query: 198 GNTVIPAGTTQVQTDVALEKMNYLVAGVVGQV 229
           G  V+  G   V  D  L  + + V GV G+V
Sbjct: 348 GKEVL--GKDAVADDGFLHGIKFYVEGVDGKV 377


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 698,877
Number of extensions: 27993
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)