BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0152.p
         (337 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313550|ref|YP_003777642.1| ABC transporter permease [Herba...   130   2e-31

>gi|300313550|ref|YP_003777642.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 152/303 (50%), Gaps = 9/303 (2%)

Query: 28  AWQNTLQRAAPLLLTALCVALPARVGLIVIGGEGALALGGLAAAVMPQLLPA----LPSL 83
           A    L ++ PL+L AL +A+  R  +  IG EG   +G L +  M   L      +   
Sbjct: 65  AISELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGHGVSGG 124

Query: 84  VMLAVMALAAMLAGGLWIALCGGLRQWRGVNETISSLLLSYLAVAVFKHLVEGPLRDPAS 143
           + L +M +A ++ G LW A+   LR     NE + SL+L+Y+A  +    V GPL+DP  
Sbjct: 125 MGLVLMIVAGVIGGALWAAITAFLRDQFNANEILVSLMLTYVAQLLLMWAVNGPLKDPNG 184

Query: 144 LNKPSTLPLPDPYLVGSL-PGLEVHWGLAWGALACVAAWVFLRHSVAGFAMGVVGGNVRT 202
           +N P +      +++ +L  G  +H G A   +A V   +F+  S+ GF++ V G     
Sbjct: 185 MNFPQSKVFSSEFMLPTLISGTRLHIGFAVAIVAAVLMAIFMMRSLRGFSLMVGGVAPHA 244

Query: 203 ARLVGLPVNRLILTACALGGAAAGLAGMFEVSAVQGSATSALLAGYGFSGILVAFAARQN 262
           AR  G      +  +  + GA AGLAG FE++   G    ++  GYGF+ I+VAF  R +
Sbjct: 245 ARYAGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLH 304

Query: 263 PLAIIVCALVIGGVEASGSLLQRRLDLPDATTLVLQGLLFCNLLAWEAITGRLSALKLRW 322
           P+  I+  L++  +   G L Q RL LP A T V QG+L   LLA + +       +L W
Sbjct: 305 PIGAILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDY----RLAW 360

Query: 323 QQQ 325
            ++
Sbjct: 361 NKK 363


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 965,846
Number of extensions: 36960
Number of successful extensions: 244
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 5
Length of query: 337
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,212,660
Effective search space: 304377660
Effective search space used: 304377660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)