BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0150.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310742|ref|YP_003774834.1| cysteine hydrolase falmily prot...   460   e-131
gi|300310740|ref|YP_003774832.1| isochorismatase family protein ...   213   9e-57
gi|300310658|ref|YP_003774750.1| 2,3-dihydro-2,3-dihydroxybenzoa...    60   1e-10

>gi|300310742|ref|YP_003774834.1| cysteine hydrolase falmily protein
           [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score =  460 bits (1184), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/231 (96%), Positives = 228/231 (98%)

Query: 1   MSERYIQAEPYPWPYDGALTPANTALIVIDMQTDFCGIGGYVDKMGYDLSLTRAPIEPIK 60
           MS R+IQAEPYPWPYDGALTPANTALIVIDMQTDFCGIGGYVDKMGYDLSLTRAPIEPI+
Sbjct: 1   MSARFIQAEPYPWPYDGALTPANTALIVIDMQTDFCGIGGYVDKMGYDLSLTRAPIEPIR 60

Query: 61  KVLAAMRAGGYTIIHTREGHRPDLSDLPANKRWRSRQIGTNGVGIGDAGPCGRILVRGEP 120
           KVLAAMRAGGYTIIHTREGHRPDLSDLPANKRWRSRQIG NGVGIGDAGPCGRILVRGEP
Sbjct: 61  KVLAAMRAGGYTIIHTREGHRPDLSDLPANKRWRSRQIGANGVGIGDAGPCGRILVRGEP 120

Query: 121 GWEIIPELAPMAGEIIIDKPGKGSFCATDLEMILHTRGIRNIVLTGITTDVCVHTTMREA 180
           GWEIIPELAP+AGEIIIDKPGKGSFCATDLEMILHTRGIRNIVLTGITTDVCVHTTMREA
Sbjct: 121 GWEIIPELAPIAGEIIIDKPGKGSFCATDLEMILHTRGIRNIVLTGITTDVCVHTTMREA 180

Query: 181 NDRGFECVMLADCCGATDYNNHLAALSMIKMQGGVFGAVSDAAALIDVIGA 231
           NDRGFECVML+DCCGATDYNNHLAALSMIKMQGGVFGAV+D+AALI VIGA
Sbjct: 181 NDRGFECVMLSDCCGATDYNNHLAALSMIKMQGGVFGAVADSAALIAVIGA 231


>gi|300310740|ref|YP_003774832.1| isochorismatase family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score =  213 bits (543), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 145/226 (64%), Gaps = 6/226 (2%)

Query: 6   IQAEPYPWPYDGALTPANTALIVIDMQTDFCGIGGYVDKMGYDLSLTRAPIEPIKKVLAA 65
           I+ + +P+PY     P +TAL+VIDMQ DF   GG+   +G D+    A +  +  +LA 
Sbjct: 2   IRIDAFPYPYQ--FHPRSTALVVIDMQRDFVEEGGFGSALGNDVRPLGAIVPTVAALLAL 59

Query: 66  MRAGGYTIIHTREGHRPDLSDLPANKRWRSRQIGTNGVGIGDAGPCGRILVRGEPGWEII 125
            R     ++HTRE H PDLSD P  KR R    G   +GIGD GP GRILVRGEPG +I+
Sbjct: 60  ARQTQMLVVHTRESHLPDLSDCPRTKRLR----GNPTLGIGDVGPMGRILVRGEPGNQIL 115

Query: 126 PELAPMAGEIIIDKPGKGSFCATDLEMILHTRGIRNIVLTGITTDVCVHTTMREANDRGF 185
           P+L PMAGEI+IDKPGKG+F ATDL   L  RGI ++++ G+TT+VCV T+MREANDRG+
Sbjct: 116 PQLTPMAGEIVIDKPGKGAFYATDLHAQLQERGITHLLVAGVTTEVCVQTSMREANDRGY 175

Query: 186 ECVMLADCCGATDYNNHLAALSMIKMQGGVFGAVSDAAALIDVIGA 231
           EC+++ D C +     H A L M+  QGG+ G  +  A L   + A
Sbjct: 176 ECLVVEDACASYFPAFHRATLDMLTAQGGIVGWRAPLAQLQSAVTA 221


>gi|300310658|ref|YP_003774750.1| 2,3-dihydro-2,3-dihydroxybenzoate
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 207

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 15/151 (9%)

Query: 56  IEPIKKVLAAMRAGGYTIIHTREGHRPDLSDLPANKRWRSRQIGTNGVGIGDAGPCGRIL 115
           IE  + +LA  R  G+ + H+R     D +D         R I       G   P    L
Sbjct: 49  IERTRSLLAHARQQGWPVAHSRIVFADDDAD---------RNI------FGMKVPGMVTL 93

Query: 116 VRGEPGWEIIPELAPMAGEIIIDKPGKGSFCATDLEMILHTRGIRNIVLTGITTDVCVHT 175
               PG  I+P+LAP  GE+++ K    +F  T L   L   G++ +++ G  T  CV  
Sbjct: 94  KEDLPGSAIVPQLAPANGELVVRKTVPSAFFGTSLAPWLTQHGVQTLLVAGAVTSGCVRA 153

Query: 176 TMREANDRGFECVMLADCCGATDYNNHLAAL 206
           ++ +A   GF  ++++DC G      H A L
Sbjct: 154 SVVDAMSWGFRPLVVSDCVGDRALGPHEANL 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 804,615
Number of extensions: 35405
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 4
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)