BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0149.p (522 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310741|ref|YP_003774833.1| ABC transporter ATPase [Herbasp... 951 0.0 gi|300313549|ref|YP_003777641.1| ABC transporter ATPase [Herbasp... 270 2e-73 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 231 1e-61 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 228 1e-60 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 216 3e-57 >gi|300310741|ref|YP_003774833.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 522 Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/522 (92%), Positives = 500/522 (95%) Query: 1 MHALELEIINAGKSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQG 60 MHALELEIINAGKSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQG Sbjct: 1 MHALELEIINAGKSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQG 60 Query: 61 SIVADRREVEIRSARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWRSERTV 120 SI+ADRREV+IRSARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRW SER V Sbjct: 61 SILADRREVDIRSARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWSSERAV 120 Query: 121 LEEFMARMPFKLGLERAVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVL 180 LEEFMA+MPFKL ER VSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVL Sbjct: 121 LEEFMAKMPFKLSPERTVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVL 180 Query: 181 GLMHALTRQQELTVLMITHKFHEVTAYADDVTVLRKGRLVGSARVSETTPDALAHWMMGH 240 GLMHALTRQQELTVLMITHKFHEV+AYADDVTVLRKGRLVGSARV+ET+PD LAHWMMG Sbjct: 181 GLMHALTRQQELTVLMITHKFHEVSAYADDVTVLRKGRLVGSARVAETSPDMLAHWMMGQ 240 Query: 241 ARAEKTQVERPAVPADARFGLEVTELTVNNDRGVAAVRALSLQVKRGEIVGLAGISGNGQ 300 ARAEK QV RPAVP A GLEV +LTVNNDRGVAAVRALSLQV+RGEIVGLAGISGNGQ Sbjct: 241 ARAEKAQVARPAVPVQASVGLEVRDLTVNNDRGVAAVRALSLQVRRGEIVGLAGISGNGQ 300 Query: 301 KELVEALLGQRRHLLGEIRIEDAPYAATREEMRRLRVFALPEEPLRNACIAGMSVAENMA 360 KELVEALLGQRR LLGEIR+E APYAATREEMRRLRVFALPEEPLRNACIAGMSVAENMA Sbjct: 301 KELVEALLGQRRLLLGEIRVEGAPYAATREEMRRLRVFALPEEPLRNACIAGMSVAENMA 360 Query: 361 LRNFDVAPFKRSGWRVNRSAMKRQAQSLIAAFNVKPPAPERPIGTLSGGNVQRAVLAREL 420 LRNFDVAPFKR GWR++RSAMKRQAQ+LI+AFNVKPP PERPIGTLSGGNVQRAVLAREL Sbjct: 361 LRNFDVAPFKRGGWRIDRSAMKRQAQALISAFNVKPPVPERPIGTLSGGNVQRAVLAREL 420 Query: 421 GEEGDAGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRI 480 GE+G GAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRI Sbjct: 421 GEDGQDGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRI 480 Query: 481 LVMTEGRIVQVAQDVATQGADRAALGRWMAGHSEQSTHAEAA 522 LVMTEGRIV VAQDVA +GADRAALGRWMAGH++QSTHAEAA Sbjct: 481 LVMTEGRIVHVAQDVAKEGADRAALGRWMAGHAQQSTHAEAA 522 >gi|300313549|ref|YP_003777641.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 270 bits (690), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 184/521 (35%), Positives = 287/521 (55%), Gaps = 38/521 (7%) Query: 4 LELEIINAGKSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSIV 63 L LEI + K++ A D+VSL + G IHA+LGENGAGKSTL+K + G D G I Sbjct: 6 LRLEISHVRKAYPGVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIR 65 Query: 64 ADRREVEIRSARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWRSERTVLEE 123 + V+I + +V +LGI MV+QHF+L +LTV EN+ L + +++ L E Sbjct: 66 WNGEAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALG-------LDAKTDLKELAE 118 Query: 124 FMARMPFKLGLE----RAVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEV 179 + R K GLE R V +LS GE+Q++EI++ L + LILDEPTSVLTPQ +++ Sbjct: 119 RITRTGEKYGLELEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLTPQAVEKL 178 Query: 180 LGLMHALTRQQELTVLMITHKFHEVTAYADDVTVLRKGRLVGSARVSETTPDALAHWMMG 239 + L + ++L I+HK E+ A TV+R GR+ G+ + +L+ M+G Sbjct: 179 FVTLRRLA-DEGCSILYISHKLDEIRALCHSATVMRGGRVTGNCDPRNESSASLSRMMIG 237 Query: 240 HARAEKTQVERPAVPADARF--GLEVTELTVNNDRGVAA-VRALSLQVKRGEIVGLAGIS 296 E +++R P R L V L++ A ++ + +V+ GEIVG+AG+S Sbjct: 238 D---ELVRLQRERNPESMRNERKLHVNRLSLPKAHLFATELKDIECEVRAGEIVGIAGVS 294 Query: 297 GNGQKELVEALLGQRRH------LLGEIRIEDAPYAATREEMRRLRVFALPEEPLRNACI 350 GNGQ+EL+ AL G+ + +LG + D + R + +PEE L + Sbjct: 295 GNGQQELLAALSGEDQRAAPHMIMLGSKAVGD----LSPNPRRAAGLGLVPEERLGRGAV 350 Query: 351 AGMSVAENMALRNFDVAPFKRSGWRVNRSAMKRQAQSLIAAFNVKPPAPERPIGTLSGGN 410 +S+ NM L + AP+ + G ++ +R A S+I F VK P+ P +LSGGN Sbjct: 351 PTLSLTANMLL-SHQKAPYVKRGM-IDFGFTRRAAASIIERFKVKAAGPDAPAKSLSGGN 408 Query: 411 VQRAVLARELGEEGDAGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDL 470 +Q+ ++ RE+ + V +VA P +G+D + A IH +L+ + G AVL++SE+L Sbjct: 409 LQKFIVGREMERK-----PAVFVVAQPTWGVDVGAAAQIHGEILKLKQEGCAVLVISEEL 463 Query: 471 DELLELSDRILVMTEGRIVQVAQDVATQGADRAALGRWMAG 511 DEL L DR+ V+ +GR+ + + + A R +G WM+G Sbjct: 464 DELFALCDRLHVIAKGRL---SPSIPIEQATREQVGVWMSG 501 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 231 bits (589), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 161/497 (32%), Positives = 253/497 (50%), Gaps = 25/497 (5%) Query: 1 MHALELEIINAGKSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQG 60 M A L++ K+FG L V L++RAG +HALLGENGAGKSTL+K L G D G Sbjct: 1 MEAAMLQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAG 60 Query: 61 SIVADRREVEIRSARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRW-----R 115 I D + S R G+G+V+Q F+L P L +N+ LAR R RW Sbjct: 61 EIRIDGQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLAR---ELRSRWGWLQRA 117 Query: 116 SERTVLEEFMARMPFKLGLERAVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQE 175 + R +E + ++ + L+ V LS ++Q +EI K L L R L+LDEPT+ LTP E Sbjct: 118 AMRRRAQEIIGQLGVAIPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAE 177 Query: 176 ADEVLGLMHALTRQQELTVLMITHKFHEVTAYADDVTVLRKGRLVGSARVSETTPDALAH 235 + + +M +L R Q + ++ I+H E+ D +TVLR G V + +E L Sbjct: 178 VEHLFAVMRSL-RAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVE 236 Query: 236 WMMGHARAEKTQVERPAV--PADARFGLEVTELTVNNDRGVAAVRALSLQVKRGEIVGLA 293 M+G R E +PA + LEV L + V+ Q++RGEI+G A Sbjct: 237 MMVGR-RIENCFPPKPAKGGEGEGEVVLEVHALQLRRQAPVS-----QFQLRRGEILGFA 290 Query: 294 GISGNGQKELVEALLGQRRHLLGEIRIEDAPY-AATREEMRRLRVFALPEEPLRNACIAG 352 G+ G+G+ E V A+LG L ++ + P A + + + LPE I Sbjct: 291 GLVGSGRTETVLAMLGAHAALSCKLSMHGVPLRFADPAQALQAGIGLLPESRKEQGLITS 350 Query: 353 MSVAENMALRNFDVAPFKRSGWRVNRSAMKRQAQSLIAAFNVKPPAPERPIGTLSGGNVQ 412 S+ N++L N+ ++ G ++R ++ ++ + VK P + + TLSGGN Q Sbjct: 351 FSILHNVSLNNY--GKYRLGGLFLDRRREQQATEAAMQRVRVKAPGAQVRVDTLSGGNQQ 408 Query: 413 RAVLARELGEEGDAGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDE 472 + V+AR + A VLI P G+D + ++I+ + + A+G ++L++S +L E Sbjct: 409 KVVIARWINH-----AMKVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMISSELPE 463 Query: 473 LLELSDRILVMTEGRIV 489 ++ ++DR+ V G IV Sbjct: 464 VVGMADRVCVFRGGGIV 480 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 228 bits (581), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 171/488 (35%), Positives = 259/488 (53%), Gaps = 34/488 (6%) Query: 13 KSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSIVADRREVEIR 72 KSFG+ AL ++ L IR G IHAL+GENGAGKSTL+K L G DQG I+ D R V +R Sbjct: 14 KSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILLDGRPVALR 73 Query: 73 SARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWR---IRWRSERTVLEEFMARMP 129 GI ++YQ +AP+++VA N+ + +L R I + R+ + + ++ Sbjct: 74 DPGASRAAGINLIYQELAVAPNISVAANVFMG-SELRTRLGLIDHAAMRSRTDAVLRQLG 132 Query: 130 FKLGLERAVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVLGLMHALTRQ 189 G LS E+Q++EI + L R R +I+DEPT+ L+ +E +++ ++ L R Sbjct: 133 AGFGASDLAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEQLFNVVRRL-RD 191 Query: 190 QELTVLMITHKFHEVTAYADDVTVLRKGRLVGSARVSETTPDALAHWMMGHARAEKTQVE 249 + L ++ I+H+ EV A AD VTVLR G VG E + + M+G + +E Q + Sbjct: 192 EGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVRDEIDSERIVQMMVGRSLSEFYQHQ 251 Query: 250 RPAVPADARFGLEVTEL-TVNNDRGVAA--VRALSLQVKRGEIVGLAGISGNGQKELVEA 306 R A PADA +L TV R +A +R S V+ GE++G AG+ G G+ EL Sbjct: 252 RIA-PADA------AQLPTVMQVRALAGGKIRPASFDVRAGEVLGFAGLVGAGRTELARL 304 Query: 307 LLGQRRHLLGEIRIE------DAPYAATREEMRRLRVFALPEEPLRNACIAGMSVAENMA 360 L G G+I +E D P AA R + +PE+ M+VA N Sbjct: 305 LFGADPRSGGDILLEGRPVHIDQPRAAMRAG-----IAYVPEDRKGQGLFLQMAVAANAT 359 Query: 361 LRNFDVAPFKRSGWRVNRSAMKRQAQSLIAAFNVKPPAPERPIGTLSGGNVQRAVLAREL 420 + +VA V ++ A++ I NVK PE P+G LSGGN Q+ +LAR L Sbjct: 360 M---NVASRHTRLGLVRSRSLGGVARAAIQRLNVKVAHPETPVGKLSGGNQQKVLLARWL 416 Query: 421 GEEGDAGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRI 480 A VLI+ P G+D + ++I+ + + ++G AV+++S +L E++ + DR+ Sbjct: 417 -----EIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDRV 471 Query: 481 LVMTEGRI 488 LVM EG I Sbjct: 472 LVMREGMI 479 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 216 bits (551), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 162/494 (32%), Positives = 253/494 (51%), Gaps = 25/494 (5%) Query: 6 LEIINAGKSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLD--QGSIV 63 LE+ KSFG RAL+ + +KIR G L GENGAGKSTL+K L G P +G I+ Sbjct: 6 LEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEIL 65 Query: 64 ADRREVEIRSARVPNQLGIGMVYQHFTLAPSLTVAENLLLAR------GDLPWRIRWRSE 117 D + ++ S R GI +++Q L P L+VAEN+ + G + + +R Sbjct: 66 WDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPAMYRRA 125 Query: 118 RTVLEEFMARMPFKLGLERAVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEAD 177 ++ E MP + + VS G +Q +EI K L R LILDEP+S LT E Sbjct: 126 EELMREL--NMP-DINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIG 182 Query: 178 EVLGLMHALTRQQELTVLMITHKFHEVTAYADDVTVLRKGRLVGSARVSETTPDALAHWM 237 +L ++ L + + + + I+HK EV D ++V+R G+ + + + E D + M Sbjct: 183 VLLKIIKDL-KARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTPMQEMDVDKIITQM 241 Query: 238 MGHARAEKTQVERPAVPADARFGLEVTELTVNNDRGVAAVRALSLQVKRGEIVGLAGISG 297 +G A+ +T ++N R V +S V+RGEI+G+AG+ G Sbjct: 242 VGREITAMYPERNHAIGEVVLEARNITCYDIDNPRR-KRVDDVSFSVRRGEILGIAGLVG 300 Query: 298 NGQKELVEALLGQRR-HLLGEIRIEDAPYAATREEMRRLR--VFALPEEPLRNACIAGMS 354 G+ ELV A+ G R G++ +E P A T ++ +R + +PE+ + + + Sbjct: 301 AGRTELVSAIFGAYRGRYEGQVLLEGKP-ADTSSPLKSIRRGLCMVPEDRKHHGIVPDLD 359 Query: 355 VAENMALRNFDVAPFKRSGWRVNRSAMKRQAQSLIAAFNVKPPAPERPIGTLSGGNVQRA 414 V +N+ L + F R G R++ SA + Q I VK P PI +LSGGN Q+A Sbjct: 360 VGQNITLTVLN--RFSR-GSRIDGSAELKTIQDEIGRMRVKTATPFLPITSLSGGNQQKA 416 Query: 415 VLARELGEEGDAGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELL 474 VLA+ L VLI+ P G+D + A+I+ + + G A+++VS +L E+L Sbjct: 417 VLAKML-----LAQPKVLILDEPTRGVDVGAKAEIYRLISELAKAGLAIIMVSSELAEVL 471 Query: 475 ELSDRILVMTEGRI 488 +SDR+LV+ EGR+ Sbjct: 472 GVSDRVLVIGEGRL 485 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,526,813 Number of extensions: 62529 Number of successful extensions: 790 Number of sequences better than 1.0e-08: 125 Number of HSP's gapped: 551 Number of HSP's successfully gapped: 155 Length of query: 522 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 432 Effective length of database: 1,193,720 Effective search space: 515687040 Effective search space used: 515687040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)