BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0146.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310738|ref|YP_003774830.1| transcription regulator protein... 448 e-127 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 77 9e-16 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 75 6e-15 gi|300314040|ref|YP_003778132.1| transcription regulator protein... 70 1e-13 >gi|300310738|ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 448 bits (1153), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/233 (93%), Positives = 227/233 (97%) Query: 1 MTVTVANPLAEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGY 60 MTVT+AN LAEQVYHR+KDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGY Sbjct: 1 MTVTLANALAEQVYHRLKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGY 60 Query: 61 LEVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALEKLCSQQEPTAELEQLNAIWLAEPEA 120 LEVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAAL+KLCSQ E +AEL QLNAIWLAEP+A Sbjct: 61 LEVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDA 120 Query: 121 RHTDAVKVAELDEAFHTNLVAAAGNVEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEEH 180 R TDAVKVA+LDEAFHTNLVAAAGN EMTRVHTEVTEKIRIVRRLDFLKKKRI+ATYEEH Sbjct: 121 RQTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEH 180 Query: 181 GKILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEPEAALAR 233 GKILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEPEAALA+ Sbjct: 181 GKILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEPEAALAQ 233 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 77.4 bits (189), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 10/199 (5%) Query: 10 AEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGW 69 AE + I++ I +L PG + ET +A+ GVSRTP+R+AL +L G +E+ RRG Sbjct: 8 AEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGA 67 Query: 70 KVCPIDFDRLDNLYDLRIVLEMAALEKLCS-----QQEPTAELEQLNAIWLAEPEARHTD 124 V I +L ++++ MA E +C + P E L A + D Sbjct: 68 IVAEIGPQQLIEMFEV-----MAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDAND 122 Query: 125 AVKVAELDEAFHTNLVAAAGNVEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEEHGKIL 184 L+EAFH ++ A + N + + ++R RRL + R++++++EH ++ Sbjct: 123 PDAYFYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQAVV 182 Query: 185 QLIAKRKATEAQILLRAHI 203 I A + LLR HI Sbjct: 183 DAIISGDAEKTVDLLREHI 201 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 74.7 bits (182), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 5/206 (2%) Query: 9 LAEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRG 68 L+E V+ +I+ I + PG +E E+A+ G+SR PLR+A+ RL+ + L G Sbjct: 17 LSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVG 76 Query: 69 WKVCPIDFDRLDNLYDLRIVLEMAALEKLCSQQEPTAELEQLNAIWLAEPEARHTDAVKV 128 +V + + L L+ +R LE A +L +Q+ AEL++L + + A + Sbjct: 77 ARVVSLTLEGLVELFQIRESLEGMAC-RLAAQRMSRAELDELRRVLDTHEKDEAFQAGRG 135 Query: 129 ---AELDEAFHTNLVAAAGNVEMTRV-HTEVTEKIRIVRRLDFLKKKRIEATYEEHGKIL 184 E D FH ++ A+GN +TR+ E+ + R+ R R + EH +IL Sbjct: 136 YYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPHRPRQAFAEHHRIL 195 Query: 185 QLIAKRKATEAQILLRAHITQSKLEV 210 +A A +L+R HI S+ + Sbjct: 196 DALADGDGELADLLMRRHIGASRRNI 221 >gi|300314040|ref|YP_003778132.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 15/216 (6%) Query: 9 LAEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRG 68 L EQVYH I D I + L P + T+ +A++ GVSR P+ A L+REG++E R+G Sbjct: 10 LIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREGFIEDAGRKG 69 Query: 69 WKVCPIDFDRLDNLYDLRIVLEMAALEKLCSQQEPTAEL--------EQLNAIWLAEPEA 120 V +D RL LY +R VL+ A Q + A L L A + Sbjct: 70 VMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKSDAALRAAGERAGRALIEAGRALADM 129 Query: 121 RHTDAVKVAELDEAFHTNLVAAAGNVEMTRVHTEVTEKIRIVRRLDFLKKKRIE---ATY 177 R A +A++D FH + + GN + + + IR R + + + A + Sbjct: 130 RDLSARILADMD--FHQFIYRSCGNPMIGQTTALHWQHIR--RAMGAILSSEVRSHLAVW 185 Query: 178 EEHGKILQLIAKRKATEAQILLRAHITQSKLEVRKI 213 EEH ILQ + + + A L R H + + ++ Sbjct: 186 EEHEAILQAMLEGRPALADKLARQHAESAAAHLARV 221 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 667,055 Number of extensions: 24533 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 9 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)