BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0144.p
         (172 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310736|ref|YP_003774828.1| isoleucyl-tRNA synthetase [Herb...   290   5e-80
gi|300309767|ref|YP_003773859.1| valyl-tRNA synthetase [Herbaspi...    58   5e-10

>gi|300310736|ref|YP_003774828.1| isoleucyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 964

 Score =  290 bits (741), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 134/141 (95%), Positives = 139/141 (98%)

Query: 1   MSNNESSAKPGKPEKAGKAPSKYPVNMTETGFPMRGDLAKREPQWVKEWQEKKVYERIRK 60
           MSNNESSAKPGKPEKAGKAPSKYPVNMTET FPMRGDLAKREPQWVK+WQEKKVYERIRK
Sbjct: 1   MSNNESSAKPGKPEKAGKAPSKYPVNMTETAFPMRGDLAKREPQWVKQWQEKKVYERIRK 60

Query: 61  ASAGRPKFILHDGPPYANGDIHIGHAVNKILKDMIVKARNMAGFDAQYVPGWDCHGMPIE 120
           ASAGRPKFILHDGPPYANG+IH+GHAVNKILKDMIVKARNMAGFDAQYVPGWDCHGMPIE
Sbjct: 61  ASAGRPKFILHDGPPYANGEIHLGHAVNKILKDMIVKARNMAGFDAQYVPGWDCHGMPIE 120

Query: 121 IQIEKQFGKNLPVAEVQAKXR 141
           IQIEK++GKNLPVAEVQAK R
Sbjct: 121 IQIEKKYGKNLPVAEVQAKAR 141


>gi|300309767|ref|YP_003773859.1| valyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 971

 Score = 57.8 bits (138), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 39  AKREPQWVKEWQEKKVYERIRKASAGRPKFILHDGPPYANGDIHIGHAVNKILKDMIVKA 98
           A+ E  W +EW+++  +     A   +P F +   PP   G +H+GHA N+ + D + + 
Sbjct: 45  AEIEKFWREEWEKRGYFAATTDAE--KPSFSIQLPPPNVTGTLHMGHAFNQTIMDGLTRY 102

Query: 99  RNMAGFDAQYVPGWDCHGMPIEIQIEKQF 127
             M G++  ++PG D  G+  +I +E+Q 
Sbjct: 103 HRMRGYNTAWIPGTDHAGIATQIVVERQL 131


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 525,979
Number of extensions: 20051
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 2
Length of query: 172
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,245,805
Effective search space: 115859865
Effective search space used: 115859865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)