BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0141.p
         (414 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310734|ref|YP_003774826.1| phosphopantothenoylcysteine syn...   738   0.0  

>gi|300310734|ref|YP_003774826.1| phosphopantothenoylcysteine
           synthetase/decarboxylase [Herbaspirillum seropedicae
           SmR1]
          Length = 398

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/396 (93%), Positives = 383/396 (96%)

Query: 1   MDLAGKKIVLGLTGGVACYKAAMLARELGRAGATVHVVMSEAATHFMTAVTMQALTGNPV 60
           MDLAGKKIVLGLTGGVACYKAAMLARELGRAGA VHVVM+EAATHFMTAVTMQALTGNPV
Sbjct: 1   MDLAGKKIVLGLTGGVACYKAAMLARELGRAGAAVHVVMTEAATHFMTAVTMQALTGNPV 60

Query: 61  YTDQWDARMDNNMPHINLTRDADAVVIVPCSTDFIAKLAHGHCDDLLSTLCVARPARVPL 120
           YTDQWDARMDNNMPHINLTRDADAVVIVPCSTDFIAKLAHG CDDLLSTLCVARPARVPL
Sbjct: 61  YTDQWDARMDNNMPHINLTRDADAVVIVPCSTDFIAKLAHGACDDLLSTLCVARPARVPL 120

Query: 121 MVAPAMNVEMWQNPATQRNVRQIRDDGILLLGPDAGAQACGEVGEGRMLEPAQLLEEIVA 180
           MVAPAMNVEMWQNPATQRNVRQIR+DGILLLGPDAGAQACGEVGEGRMLEPAQLLEEIVA
Sbjct: 121 MVAPAMNVEMWQNPATQRNVRQIREDGILLLGPDAGAQACGEVGEGRMLEPAQLLEEIVA 180

Query: 181 AFQPKLLAGRRVLLTAGPTFEPIDPVRGITNLSSGKMGYAIARAAREAGAEVTLVSGPTA 240
           A QPKLLAGRRVLLTAGPTFEPIDPVRGITNLSSGKMGYAIARAAREAGAEVTLVSGPTA
Sbjct: 181 ALQPKLLAGRRVLLTAGPTFEPIDPVRGITNLSSGKMGYAIARAAREAGAEVTLVSGPTA 240

Query: 241 LETPYGVQRVEVQTALQMHEAVLAHVKEKDLFVAVAAVADWRVANASEQKLKKQDENDTP 300
           L TPYGV+RV+VQTA QMH+AV+A V  +DLFVAVAAVADWRVANAS QKLKKQ++ DTP
Sbjct: 241 LATPYGVRRVDVQTAQQMHDAVMAQVAGQDLFVAVAAVADWRVANASAQKLKKQNDADTP 300

Query: 301 HLQFVQNPDILATVAALPQRPYCVGFAAESENLEQYGAAKRIRKNIPLLVGNIGHQTFGR 360
            L FVQNPDILATVAALPQRPYCVGFAAESENLE YGAAKRI+KNIPLLVGNIGHQTFGR
Sbjct: 301 ELHFVQNPDILATVAALPQRPYCVGFAAESENLEHYGAAKRIKKNIPLLVGNIGHQTFGR 360

Query: 361 DDNALMLFDAQGHSALPRADKQTLARQLVREIARRM 396
           DDNALMLFDAQGH+ALPRADKQTLARQLVREIARR+
Sbjct: 361 DDNALMLFDAQGHTALPRADKQTLARQLVREIARRL 396


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,189,181
Number of extensions: 46222
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,203,190
Effective search space: 392239940
Effective search space used: 392239940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)