BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0130.p
         (517 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310724|ref|YP_003774816.1| virulence factor transmembrane ...   979   0.0  

>gi|300310724|ref|YP_003774816.1| virulence factor transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 517

 Score =  979 bits (2531), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/517 (92%), Positives = 505/517 (97%)

Query: 1   MNLHKTLAAISGMTMLSRITGLAREILFARAFGASAYTDAFNIAFRIPNLLRRLFAEGAF 60
           MNLHKTLAAISGMTMLSRITGL REILFARAFGASAYTDAFNIAFRIPNLLRRLFAEGAF
Sbjct: 1   MNLHKTLAAISGMTMLSRITGLVREILFARAFGASAYTDAFNIAFRIPNLLRRLFAEGAF 60

Query: 61  SQAFVPILAEYKNRRGPEETKHLVDHVATALMWVMLITCVAGIVATPFVVYFIATGLQYN 120
           SQAFVPILAEYKN+RG ++TKHLVDHVAT LMWVML+TCVAGI+ATPFVVYFIATGLQYN
Sbjct: 61  SQAFVPILAEYKNQRGEQQTKHLVDHVATVLMWVMLVTCVAGILATPFVVYFIATGLQYN 120

Query: 121 PDAFQASVLMTRIMFPYIGFMAFVALAGGILNTWKEFKIPAVTSVLLNVAFIVASLFVAP 180
           PDAF ASV+MTRIMFPYIGFMAFVALAGGILNTWKEFKIPAVTSVLLN+AFI+ASLFVAP
Sbjct: 121 PDAFNASVVMTRIMFPYIGFMAFVALAGGILNTWKEFKIPAVTSVLLNLAFIIASLFVAP 180

Query: 181 FMEQPIYAMAFAVLVGGILQVAIQVPALIKIGMLPRLYWNPLLGLRDEGVKRVLKKMGPA 240
           FM QPIYAMAFAVLVGGILQVAIQVPAL+KIGMLP LYWNPLLGLRDEGVKRVLKKMGPA
Sbjct: 181 FMAQPIYAMAFAVLVGGILQVAIQVPALMKIGMLPHLYWNPLLGLRDEGVKRVLKKMGPA 240

Query: 241 VFAVSAAQISLMINTNIASRLEHGSVSWLSYADRLMEFPTALLGVALGTILLPSLANAHA 300
           +FAVSAAQISLMINTNIASRLEHGSVSWLSYADRLMEFPTALLGVALGTILLPSL+NAHA
Sbjct: 241 IFAVSAAQISLMINTNIASRLEHGSVSWLSYADRLMEFPTALLGVALGTILLPSLSNAHA 300

Query: 301 ADDMDEYSALLDWGLRLTFMLAMPSAVGLATLSEPLTATLFHYGRFDALSVTMVGHALVA 360
           A DM+EYS+LLDWGLRLTFMLAMPSAV LATLSEPLTATLFHYGRFDALSVTM GHALVA
Sbjct: 301 AQDMEEYSSLLDWGLRLTFMLAMPSAVALATLSEPLTATLFHYGRFDALSVTMTGHALVA 360

Query: 361 YGVGLIGLIVVKILAPGFYAKQDIRTPVIIAIGVLIATQLMNSVFVPLFSHAGLALSIGL 420
           YGVGLIGL++VKILAPGFYAKQDIRTPVIIA+GVLIATQLMNSVFVPLF+HAGLALSIGL
Sbjct: 361 YGVGLIGLVMVKILAPGFYAKQDIRTPVIIAVGVLIATQLMNSVFVPLFAHAGLALSIGL 420

Query: 421 GACLNALCLYIGLRRRQIYVPRPGWGLFLVRLTGALLVMAGVALWISGHFDWVALRAHPL 480
           GACLNALCL+IGLRRRQIYVPRPGWGLFLVRLTGALLV+AG +LWI+GHFDW+ALRAHPL
Sbjct: 421 GACLNALCLFIGLRRRQIYVPRPGWGLFLVRLTGALLVLAGASLWIAGHFDWIALRAHPL 480

Query: 481 LRIGALMLVLAVCAVAYFGPLFAMGFRLREFKRIARR 517
           +RIGAL LV+ VCA+AYFGPLFAMGFRLREFKRIARR
Sbjct: 481 MRIGALALVMLVCALAYFGPLFAMGFRLREFKRIARR 517


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.142    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,597,982
Number of extensions: 68246
Number of successful extensions: 329
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 428
Effective length of database: 1,198,455
Effective search space: 512938740
Effective search space used: 512938740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 133 (55.8 bits)