BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0125.p
         (273 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310720|ref|YP_003774812.1| cytochrome c553 protein [Herbas...   325   3e-90
gi|300309495|ref|YP_003773587.1| cytochrome c553 protein [Herbas...    97   2e-21

>gi|300310720|ref|YP_003774812.1| cytochrome c553 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 252

 Score =  325 bits (832), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 164/205 (80%), Positives = 175/205 (85%)

Query: 61  GMAERMAACIACHGKEGRATADGYYPRIAGKPEGYLLNQLQSFRDGRRRYPMMNYLLGHL 120
           GMAERMAAC ACHGK+GRATADGYYPRIAGKPE YLLNQLQSFRDG+RRYPMMNYLL +L
Sbjct: 44  GMAERMAACTACHGKQGRATADGYYPRIAGKPEAYLLNQLQSFRDGQRRYPMMNYLLANL 103

Query: 121 SDDYLQQIALFFADQHPPYPPPVPADVSATVLERGRLLVRQGKPAQGIAACASCHGAGLT 180
           SDDYLQQIA FFADQHPPYPPP   + SATVLERGR LV +G P + + ACA+CH   L 
Sbjct: 104 SDDYLQQIARFFADQHPPYPPPASNEASATVLERGRRLVTEGDPQRRLPACAACHAPSLG 163

Query: 181 GVQPGIPGLLGLPRDYINAQLGAWRNGERTAKVPDCMGEIARALSPEEINAASSWLSSQP 240
           GVQPGIPGLLGLPRDYINAQLGAWRNG+RTAK PDCM  +ARALSPEEINAASSWLS+Q 
Sbjct: 164 GVQPGIPGLLGLPRDYINAQLGAWRNGDRTAKTPDCMAAVARALSPEEINAASSWLSAQA 223

Query: 241 VPADYAPERVLPKPLPVACGSMPGS 265
           VPADYAP   LP PLP  CGS P S
Sbjct: 224 VPADYAPAPALPSPLPQQCGSQPQS 248


>gi|300309495|ref|YP_003773587.1| cytochrome c553 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 7/175 (4%)

Query: 63  AERMAACIACHGKEGRATADGYYPRIAGKPEGYLLNQLQSFRDGRRRYPMMNYLLGHLSD 122
           A  + AC++CHG  G +T     P++AG+ E Y+  QL +FR   R  P+M+ +   LSD
Sbjct: 50  ARNIVACVSCHGAAGNSTIT-QNPKLAGQHEAYIAKQLLNFRTPDRNNPVMSPMAKALSD 108

Query: 123 DYLQQIALFFADQHPPYPPPVPADVSATVLERGRLLVRQGKPAQGIAACASCHGAGLTGV 182
           + +  +A F A Q    P P  A    T+ + G+ + R G  A+ + ACA CH     G+
Sbjct: 109 EDIHNVAAFLAAQ---APKPGAAKNKDTI-DLGKHIWRAGIAAKNVPACAGCHSPNGAGI 164

Query: 183 QPGIPGLLGLPRDYINAQLGAWRNGERTAKVPDCMGEIARALSPEEINAASSWLS 237
               P L G  +DY  AQL  +R G RT  V   M  I+  LS +EI A + +++
Sbjct: 165 PAQYPRLAGQHQDYTVAQLTNFRGGARTNSVQ--MTTISERLSDKEIKAVADYIA 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 848,952
Number of extensions: 35653
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 2
Length of query: 273
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,222,130
Effective search space: 230982570
Effective search space used: 230982570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)