BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0121.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase [Herb...   401   e-113

>gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase
           [Herbaspirillum seropedicae SmR1]
          Length = 444

 Score =  401 bits (1031), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/216 (91%), Positives = 210/216 (97%)

Query: 1   VASVREYRADLGIALDGDADRLIMVDGSGRIYNGDELLYLMVKDRLSSGAVDGAVGTLMT 60
           VASVREYRADLGIALDGDADRLIMVDG GRIYNGDELLYLMVKDRL++G V GAVGTLMT
Sbjct: 229 VASVREYRADLGIALDGDADRLIMVDGEGRIYNGDELLYLMVKDRLATGPVHGAVGTLMT 288

Query: 61  NMALEVAFKKMGVPFARAKVGDRYVLEVLQEKGWLLGGEGSGHLLALDKHTTGDGIVSAL 120
           NMALEVAFKKMGVPF RAKVGDRYVLEVLQEKGW+LGGEGSGHLLALDKHTTGDGIVSAL
Sbjct: 289 NMALEVAFKKMGVPFERAKVGDRYVLEVLQEKGWVLGGEGSGHLLALDKHTTGDGIVSAL 348

Query: 121 QVLCALKRAGQTLAQMTGDITLYPQSLINVKIPAGYDWKSNTALQAEQAAVEEELGERGR 180
           QVL ALKR+G+TLA++T DI++YPQSL+NVKIPAGYDWKSNTALQAE+AAVEEELGERGR
Sbjct: 349 QVLSALKRSGKTLAELTSDISMYPQSLVNVKIPAGYDWKSNTALQAEKAAVEEELGERGR 408

Query: 181 VLLRPSGTEPLIRVMVEAQEAELARSMAQRIAAKVL 216
           VLLRPSGTEPLIRVMVEAQ+A+LARSMAQRIAAKVL
Sbjct: 409 VLLRPSGTEPLIRVMVEAQQADLARSMAQRIAAKVL 444


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 539,036
Number of extensions: 19699
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)