BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0120.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase [Herb...   281   3e-77
gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspiril...    54   6e-09

>gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase
           [Herbaspirillum seropedicae SmR1]
          Length = 444

 Score =  281 bits (718), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 150/159 (94%), Positives = 153/159 (96%)

Query: 1   MAGKYFGTDGVRGRVGVAPITPDFVMRLGYAAGKVLAKSKDGVARPTVLIGKDTRISGYM 60
           MA KYFGTDGVRGRVGVAPITPDFVMRLGYAAGKVLAK+KDG+ RPTVLIGKDTRISGYM
Sbjct: 1   MAAKYFGTDGVRGRVGVAPITPDFVMRLGYAAGKVLAKAKDGMTRPTVLIGKDTRISGYM 60

Query: 61  LEAALEAGFAAAGVDVWLAGPLPTPAVAYLTRAQRLSAGVVISASHNPYHDNGIKFFSAK 120
           LEAALEAGFAAAGVDVWLAGPLPTPAVAYLTRA RLSAGVVISASHNPYHDNGIKFFSA 
Sbjct: 61  LEAALEAGFAAAGVDVWLAGPLPTPAVAYLTRALRLSAGVVISASHNPYHDNGIKFFSAS 120

Query: 121 GNKLPDQVEADIEAALEQPMECVPSEKLGKARRLSDAAG 159
           GNKLPD VEADIEAALEQPM+CVPSEKLGKARRLSDA G
Sbjct: 121 GNKLPDSVEADIEAALEQPMDCVPSEKLGKARRLSDAPG 159


>gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspirillum
           seropedicae SmR1]
          Length = 458

 Score = 54.3 bits (129), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%)

Query: 28  LGYAAGKVLAKSKDGVARPTVLIGKDTRISGYMLEAALEAGFAAAGVDVWLAGPLPTPAV 87
           + Y  G+    +     +  V+IG+D R+SG  L A L  G  A GVDV   G + TP V
Sbjct: 26  VAYRIGQAFGAAALAKGQKKVVIGRDGRLSGPELAAELARGLQAVGVDVIDLGMVATPMV 85

Query: 88  AYLTRAQRLSAGVVISASHNPYHDNGIKFFSA 119
            + T      +G++++ SHNP   NG K   A
Sbjct: 86  YFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLA 117


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 686,659
Number of extensions: 27086
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)