BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0118.p
         (610 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310715|ref|YP_003774807.1| ATP-dependent Zn metallopeptida...  1241   0.0  
gi|300312768|ref|YP_003776860.1| AAA+ class ATPase [Herbaspirill...   102   1e-22

>gi|300310715|ref|YP_003774807.1| ATP-dependent Zn metallopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 629

 Score = 1241 bits (3211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/610 (98%), Positives = 606/610 (99%)

Query: 1   MVFKQFDSRSMATNAKPIAYSDFISEVKAGHIKDATIEDRNIIATTQDGTKVKTATTILD 60
           MVFKQFDSRSMATNAK IAYSDFISEVKAGHIKDATIEDR I+ATTQDGTKVKTA T LD
Sbjct: 20  MVFKQFDSRSMATNAKAIAYSDFISEVKAGHIKDATIEDRTIVATTQDGTKVKTAATYLD 79

Query: 61  RGLVGDLLNNGVKFDVRQPEEQSFLSQIFISWFPMLLLIGVWIFFMRQMQGGGKGGAFSF 120
           RGLVGDLLNNGVKFDV+QPEEQSFLSQ+FISWFPMLLLIGVWIFFMRQMQGGGKGGAFSF
Sbjct: 80  RGLVGDLLNNGVKFDVKQPEEQSFLSQVFISWFPMLLLIGVWIFFMRQMQGGGKGGAFSF 139

Query: 121 GKSKARMLDENSNSVTFADVAGCDEAKEEVQELVEFLRDPTKFQKLGGRIPHGVLMVGPP 180
           GKSKARMLDENSNSVTFADVAGCDEAKEEVQELVEFLRDPTKFQKLGGRIPHGVLMVGPP
Sbjct: 140 GKSKARMLDENSNSVTFADVAGCDEAKEEVQELVEFLRDPTKFQKLGGRIPHGVLMVGPP 199

Query: 181 GTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFENAKKHAPCIIFIDEID 240
           GTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFENAKKHAPCIIFIDEID
Sbjct: 200 GTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFENAKKHAPCIIFIDEID 259

Query: 241 AVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEANSGVIVIAATNRADVLDKALLRPGRFD 300
           AVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEANSGVIVIAATNRADVLDKALLRPGRFD
Sbjct: 260 AVGRHRGAGMGGGNDEREQTLNQMLVEMDGFEANSGVIVIAATNRADVLDKALLRPGRFD 319

Query: 301 RQVMVGLPDIRGREQILYVHMRKVPIAPDVKADILARGTPGFSGADLANLVNEAALFAAR 360
           RQVMVGLPDIRGREQILYVHMRKVPIAPDVKADILARGTPGFSGADLANLVNEAALFAAR
Sbjct: 320 RQVMVGLPDIRGREQILYVHMRKVPIAPDVKADILARGTPGFSGADLANLVNEAALFAAR 379

Query: 361 RNKRLVEMQDFEDAKDKIVMGPERKSAVMREEERRNTAYHESGHAVVAKLLPKADPVHKV 420
           RNKRLVEMQDFEDAKDKIVMGPERKSAVMREEERRNTAYHESGHAVVAKLLPKADPVHKV
Sbjct: 380 RNKRLVEMQDFEDAKDKIVMGPERKSAVMREEERRNTAYHESGHAVVAKLLPKADPVHKV 439

Query: 421 TIMPRGYALGLTWQLPEHDRVNMYKDKMLEEISILFGGRIAEEIFMHQMSTGASNDFERA 480
           TIMPRGYALGLTWQLPEHDRVNMYKDKMLEEISILFGGRIAEEIFMHQMSTGASNDFERA
Sbjct: 440 TIMPRGYALGLTWQLPEHDRVNMYKDKMLEEISILFGGRIAEEIFMHQMSTGASNDFERA 499

Query: 481 TKLARAMVTRYGMSVTLGTMVYEDSEQDAYFGRMSSKTVSEATQQKVDAEIRSILDEQYA 540
           TKLARAMVTRYGMSVTLGTMVYEDSEQDAYFGRMSSKTVSEATQQKVDAEIRSILDEQYA
Sbjct: 500 TKLARAMVTRYGMSVTLGTMVYEDSEQDAYFGRMSSKTVSEATQQKVDAEIRSILDEQYA 559

Query: 541 LARRLLEENREKVDVMAKALLEWETLDADQVNDIMNGDEPRPPRNGVPAKKSPSDNNRSG 600
           LARRLLEE+R+KVDVMAKALLEWETLDADQVNDIMNGDEPRPPRNGVPAKKSPSDNNRSG
Sbjct: 560 LARRLLEEHRDKVDVMAKALLEWETLDADQVNDIMNGDEPRPPRNGVPAKKSPSDNNRSG 619

Query: 601 DVSPNATAPA 610
           DVSPNATAPA
Sbjct: 620 DVSPNATAPA 629


>gi|300312768|ref|YP_003776860.1| AAA+ class ATPase [Herbaspirillum
           seropedicae SmR1]
          Length = 389

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 111/212 (52%), Gaps = 11/212 (5%)

Query: 150 VQELVEFLRDPTKFQKLGGRIPHGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVE 209
           ++E +  +R     Q      P  +L+ G PGTGKT  AR IAGE K+P  T+     + 
Sbjct: 110 IREFLNTVRYYDALQASEAASPLRLLIYGAPGTGKTQTARWIAGELKLPLLTVRCDTLIS 169

Query: 210 MFVGVGASRVRDMFENAKKHAPCIIFIDEIDAVGRHRGAGMGGGNDEREQTLNQMLVEMD 269
             +G  +  +R +FE  ++  PC++F+DE DA+G  RG     G  E ++ +  +L  +D
Sbjct: 170 SLLGQTSKNLRQVFEYVEQR-PCVLFLDEFDALGSARGNERDVG--ELQRVVISLLQNLD 226

Query: 270 GFEANSGVIVIAATNRADVLDKALLRPGRFDRQVMVGLPDIRGREQILYVHMRKVPIAPD 329
               N+  IV+AA+N   +LD A+ R  RF  +V + LPD + R++ L+  M     +  
Sbjct: 227 ALSENT--IVVAASNHDQLLDSAIWR--RFPFRVPLPLPDFQLRKE-LWKEMLGKFSSSA 281

Query: 330 VKADILARGTPGFSGADLANLV---NEAALFA 358
           +  D+LA  + G SGA +  +V      A+FA
Sbjct: 282 LDFDLLAEKSEGISGALIEQIVLDSKRTAIFA 313


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,750,059
Number of extensions: 71107
Number of successful extensions: 328
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 2
Length of query: 610
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 519
Effective length of database: 1,188,985
Effective search space: 617083215
Effective search space used: 617083215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)