BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0112.p
         (387 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310710|ref|YP_003774802.1| carbamoyl-phosphate synthase sm...   796   0.0  
gi|300313183|ref|YP_003777275.1| anthranilate synthase glutamine...    64   2e-11

>gi|300310710|ref|YP_003774802.1| carbamoyl-phosphate synthase small
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/387 (99%), Positives = 387/387 (100%)

Query: 1   LLPLLSGPAIPAVLALADGSVFQGFSIGAAGNTTGEVVFNTAMTGYQEILTDPSYSRQIV 60
           +LPLLSGPAIPAVLALADGSVFQGFSIGAAGNTTGEVVFNTAMTGYQEILTDPSYSRQIV
Sbjct: 1   MLPLLSGPAIPAVLALADGSVFQGFSIGAAGNTTGEVVFNTAMTGYQEILTDPSYSRQIV 60

Query: 61  TLTYPHIGNTGVNREDVEASQIHAAGLIIKDLPRLLSNFRSQQSLSDYLKEGNIVSIAGI 120
           TLTYPHIGNTGVNREDVEASQIHAAGLIIKDLPRLLSNFRSQQSLSDYLKEGNIVSIAGI
Sbjct: 61  TLTYPHIGNTGVNREDVEASQIHAAGLIIKDLPRLLSNFRSQQSLSDYLKEGNIVSIAGI 120

Query: 121 DTRKLTRILREKGAQNGAIVAGEADIAAATAKALELARAFPGLAGMDLAKVVSTRKAYNW 180
           DTRKLTRILREKGAQNGAIVAGEADIAAATAKALELARAFPGLAGMDLAKVVST+KAYNW
Sbjct: 121 DTRKLTRILREKGAQNGAIVAGEADIAAATAKALELARAFPGLAGMDLAKVVSTQKAYNW 180

Query: 181 TETEWRLGRGYGQQITPKFHVVAFDYGVKFNILRMLAERGCKVTVLPAQATAAEALALNP 240
           TETEWRLGRGYGQQITPKFHVVAFDYGVK+NILRMLAERGCKVTVLPAQATAAEALALNP
Sbjct: 181 TETEWRLGRGYGQQITPKFHVVAFDYGVKYNILRMLAERGCKVTVLPAQATAAEALALNP 240

Query: 241 DGIFLSNGPGDPEPCDYAIAASKELIERGIPTFGICLGHQIMALASGAKTLKMKFGHHGA 300
           DGIFLSNGPGDPEPCDYAIAASKELIERGIPTFGICLGHQIMALASGAKTLKMKFGHHGA
Sbjct: 241 DGIFLSNGPGDPEPCDYAIAASKELIERGIPTFGICLGHQIMALASGAKTLKMKFGHHGA 300

Query: 301 NHPVQDLDSKQVMITSQNHGFAVDQATLPANCRVTHVSLFDGSLQGFERTDKPAFCFQGH 360
           NHPVQDLDSKQVMITSQNHGFAVDQATLPANCRVTHVSLFDGSLQGFERTDKPAFCFQGH
Sbjct: 301 NHPVQDLDSKQVMITSQNHGFAVDQATLPANCRVTHVSLFDGSLQGFERTDKPAFCFQGH 360

Query: 361 PEASPGPHDIAPLFDKFVAMMEKKQNA 387
           PEASPGPHDIAPLFDKFVAMMEKKQNA
Sbjct: 361 PEASPGPHDIAPLFDKFVAMMEKKQNA 387


>gi|300313183|ref|YP_003777275.1| anthranilate synthase glutamine
           amido-transferase [Herbaspirillum seropedicae SmR1]
          Length = 191

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 13/173 (7%)

Query: 210 FNILRMLAERGCKV-TVLPAQATAAEALALNPDGIFLSNGPGDPEPCDYAIAASKELIER 268
           +N+++   E G +V T+   + T  +   LNP+ I LS GP  P+     +   KE   +
Sbjct: 13  YNLVQYFGELGEEVLTIRNDEITLDDIRKLNPERICLSPGPCSPKEAGICVDLLKEFSGK 72

Query: 269 GIPTFGICLGHQIMALASGAKTLKMKFGHHGANHPV--------QDLDSKQVMITSQNHG 320
            +P  G+CLGHQ +  A G   ++ K   HG    +        QDL S   +I  + H 
Sbjct: 73  -LPILGVCLGHQAIGEAFGGNIIRAKQVMHGKTSKIAHTGVGVFQDLPSPYTVI--RYHS 129

Query: 321 FAVDQATLPANCRVTHVSLFDGSLQGFERTDKPAFCFQGHPEASPGPHDIAPL 373
            A+++ATLP    VT  +  DG + G    +      Q HPE+    H  A L
Sbjct: 130 LAIERATLPDCLEVTAWT-DDGEIMGVRHKEFDLQGVQFHPESILSEHGHALL 181


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,163,910
Number of extensions: 44874
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 2
Length of query: 387
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 300
Effective length of database: 1,207,925
Effective search space: 362377500
Effective search space used: 362377500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)