BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0109.p
         (331 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310707|ref|YP_003774799.1| esterase of the alpha-beta hydr...   544   e-156
gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane prote...   147   1e-36

>gi|300310707|ref|YP_003774799.1| esterase of the alpha-beta
           hydrolase superfamily protein [Herbaspirillum
           seropedicae SmR1]
          Length = 316

 Score =  544 bits (1401), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 274/318 (86%), Positives = 290/318 (91%), Gaps = 3/318 (0%)

Query: 12  MRHSSRLMAAAIASVFLLSACGTSSLLPGGAGNKPVEASGSTAVAPSATAAPTPRRIKIG 71
           MR   RL AAA+AS F LSACGTSS +PG +  +    + S+ V P    +PTPRR+KIG
Sbjct: 1   MRFPFRLAAAALASTFFLSACGTSSWMPGSSSPREGGTATSSTVTP---VSPTPRRLKIG 57

Query: 72  LALGGGAARGFAHIGVIKALEAQGITVDVVAGTSAGSLVGALYAAGNDGFALQKLALAMD 131
           LALGGGAARGFAHIGVIKALEAQG+ VDVV GTSAGSLVGALYAAGNDGFALQKLALAMD
Sbjct: 58  LALGGGAARGFAHIGVIKALEAQGVQVDVVTGTSAGSLVGALYAAGNDGFALQKLALAMD 117

Query: 132 EAAISDWSVPLFSKVSGVLKGEGVQNYVNKAVHNVPIEKFKIPFGAVATDLRTGQPILFQ 191
           EAAISDWSVPLFSKVSGVLKGEGVQNYVNKA++NVPIEKFKIPFGAVATDLR+GQPILFQ
Sbjct: 118 EAAISDWSVPLFSKVSGVLKGEGVQNYVNKALNNVPIEKFKIPFGAVATDLRSGQPILFQ 177

Query: 192 RGNAGTAVRASSAVPGVFQSVRIGDHTYVDGGLVSPVPVRFARQMGADFVIAVNISANPE 251
           RGNAG AVRASSAVPGVFQSV+IGDHTYVDGGLVSPVPVRFARQMGADFVIAVNISANPE
Sbjct: 178 RGNAGIAVRASSAVPGVFQSVKIGDHTYVDGGLVSPVPVRFARQMGADFVIAVNISANPE 237

Query: 252 AQAASSSSIDVLLQTFAIMGQTINQYELKNADIVLQPGLGSMKGSDFASRNVAILAGEQA 311
           AQAASSSS+DVLLQTFAIMGQTINQYELKNADIVLQPGLG+MKGSDFASRNVAI+AGEQA
Sbjct: 238 AQAASSSSVDVLLQTFAIMGQTINQYELKNADIVLQPGLGAMKGSDFASRNVAIMAGEQA 297

Query: 312 ATAAMPEIKRKLKLMATG 329
           A AAMPEIKRKLK M  G
Sbjct: 298 ALAAMPEIKRKLKAMQMG 315


>gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 758

 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 156/300 (52%), Gaps = 37/300 (12%)

Query: 46  PVEASGSTAVAPSATAAPTPRRIKIGLALGGGAARGFAHIGVIKALEAQGITVDVVAGTS 105
           P  A  S+  AP+AT  P PR   + L L GG ARG+AH+GV++ LE   I +D +AGTS
Sbjct: 24  PAAAETSSTAAPAATQ-PRPR---VCLVLSGGGARGYAHLGVLQYLEQLHIPIDCIAGTS 79

Query: 106 AGSLVGALYAAGNDGFALQKLALAMDEAAIS----------------DWSVPL------- 142
            G+L+G LYA+G D   L++   A + + I+                ++  P+       
Sbjct: 80  MGALIGGLYASGLDAGELERRLAATNLSDIAFDRNERSRLPQAQREDEFQYPISISAGLD 139

Query: 143 ---FSKVSGVLKGEGV----QNYVNKAVHNVPIEKFKIPFGAVATDLRTGQPILFQRGNA 195
                  SG+++G  +    QN+  +   N+   +  IPF AVATDL  G  ++   G+ 
Sbjct: 140 GSKLKLASGLVQGNKLLALLQNWTAQLPANIDFARLPIPFRAVATDLSLGSEVVLDHGSL 199

Query: 196 GTAVRASSAVPGVFQSVRIGDHTYVDGGLVSPVPVRFARQMGADFVIAVNISANPEAQAA 255
             A+RAS AVPG+F   RI   T VDGGLVS +PV+ AR MGAD VIAVNI+   +  A 
Sbjct: 200 PRAMRASMAVPGLFAPFRIDQRTLVDGGLVSNLPVQTARDMGADVVIAVNIATPLQDAAQ 259

Query: 256 SSSSIDVLLQTFAIMGQTINQYE---LKNADIVLQPGLGSMKGSDFASRNVAILAGEQAA 312
             S   V  Q   I+ Q   + +   L   DI+++P +  M  +DFA     + AG +AA
Sbjct: 260 LQSPTAVAQQMVGILIQQNVKAQKALLGAQDILIEPQMEGMSFTDFARGKDGVNAGWEAA 319


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 912,010
Number of extensions: 35207
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,212,660
Effective search space: 297101700
Effective search space used: 297101700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)