BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0102.p (316 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310701|ref|YP_003774793.1| LysR family transcription regul... 553 e-159 gi|300313164|ref|YP_003777256.1| LysR family transcription regul... 264 8e-72 gi|300309487|ref|YP_003773579.1| LysR family transcription regul... 243 1e-65 gi|300310375|ref|YP_003774467.1| LysR family transcription regul... 176 3e-45 gi|300311542|ref|YP_003775634.1| LysR family transcription regul... 81 9e-17 >gi|300310701|ref|YP_003774793.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 553 bits (1425), Expect = e-159, Method: Compositional matrix adjust. Identities = 273/314 (86%), Positives = 294/314 (93%) Query: 1 MKPAPSQQSLNSLLSRLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLD 60 M AP QSLNSLLSRLRMKQLQLLIALD+H+SLHKASSALAMTQSAASKSLAELESMLD Sbjct: 8 MSSAPRPQSLNSLLSRLRMKQLQLLIALDEHKSLHKASSALAMTQSAASKSLAELESMLD 67 Query: 61 AQLFERTRSGLIPNQFGHCVIRYARLMATDLGSLCEEMAQIRSGRGGRLAIGAVMGALPE 120 AQLFERT+SGLI N FGHCVIRYARLMATDLGSLCEEMAQIRSG+GGRLAIGAVMGA+P Sbjct: 68 AQLFERTKSGLIANPFGHCVIRYARLMATDLGSLCEEMAQIRSGQGGRLAIGAVMGAVPA 127 Query: 121 LVVPAVDALQRRHPELSIDIVEETSVQLLSRLDEGHLDLLVARASVSDNPGKYHYQPLSE 180 L+VPAVDALQRRHP LSI+IVE+TS+ +L LDEGHLDLLVARASVS +PGKYHYQ LSE Sbjct: 128 LIVPAVDALQRRHPALSIEIVEDTSLHMLDLLDEGHLDLLVARASVSAHPGKYHYQSLSE 187 Query: 181 EPLSVVVSGEHPRPRGRQMSLAALAGYRWVTYPSHMPLHAVLEREMDLAGVSMPGNAIST 240 EPLSVVVS EHPRPRG+++ LAALAGYRW+TYPSHMPLHAVLEREMDLAG+SMP N I+T Sbjct: 188 EPLSVVVSAEHPRPRGKELQLAALAGYRWITYPSHMPLHAVLEREMDLAGLSMPANTIAT 247 Query: 241 ASTFVTVALLQQGTDMVSILPTAVAEMFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSM 300 ASTFVTVALLQQG DMVSILPTAVAEMFV+RGMLRILPVKLRSMSQTIGIVTRKGGQLS Sbjct: 248 ASTFVTVALLQQGADMVSILPTAVAEMFVQRGMLRILPVKLRSMSQTIGIVTRKGGQLSG 307 Query: 301 AGQAFVRLLQEGIC 314 AGQAFV+LL+EG+ Sbjct: 308 AGQAFVQLLREGLA 321 >gi|300313164|ref|YP_003777256.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 264 bits (674), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 136/303 (44%), Positives = 199/303 (65%), Gaps = 2/303 (0%) Query: 9 SLNSLLSRLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTR 68 S+ S++SRLR +Q+ LL ALD+ SLHKA+ + MTQ AA+K+L E+E L LF+R+ Sbjct: 22 SVGSIVSRLRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFDRSP 81 Query: 69 SGLIPNQFGHCVIRYARLMATDLGSLCEEMAQIRSGRGGRLAIGAVMGALPELVVPAVDA 128 G+ + G CVIRYARL+ +D+ +L +E+ + SGRGGRLAIG +MGA P V A+ Sbjct: 82 RGIEATELGRCVIRYARLIQSDVANLRDELQNMISGRGGRLAIGTIMGAAP-FVTRALSR 140 Query: 129 LQRRHPELSIDIVEETSVQLLSRLDEGHLDLLVARASVSDNPGKYHYQPLSEEPLSVVVS 188 L+ PE+SI+I E+TS + L LD+G +DL++ R+SVS P YHY+ L EP+ +V Sbjct: 141 LREIQPEVSIEISEDTSARQLLLLDQGRIDLMIGRSSVSSQPNLYHYEMLRGEPMCIVSG 200 Query: 189 GEHPRPRGRQMSLAALAGYRWVTYPSHMPLHAVLEREMDLAGVSMPGNAISTASTFVTVA 248 +HP +++ L LA W+ Y S+MP+ +E E L GV +PGN I TAS FVT+ Sbjct: 201 IDHPLATAQKVRLQELAEASWILYSSNMPMRIWIEHEFKLEGVKVPGNVIETASPFVTIT 260 Query: 249 LLQQGTDMVSILPTAVAEMFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSMAGQAFVRL 308 LL Q ++MV+++P +A F + ML ILPV L++ + GIVTRK LS + F+++ Sbjct: 261 LLAQ-SNMVAVMPLDIAHFFAAKQMLGILPVNLKTRIEHYGIVTRKNTTLSSLAKMFIQI 319 Query: 309 LQE 311 L++ Sbjct: 320 LRQ 322 >gi|300309487|ref|YP_003773579.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 243 bits (621), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 142/298 (47%), Positives = 190/298 (63%), Gaps = 1/298 (0%) Query: 9 SLNSLLSRLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTR 68 SL S+ SRL ++QL+LLIAL DH SL KA+ +A+TQ ASK+L E+ES L QLF RT Sbjct: 7 SLASITSRLHLRQLRLLIALSDHGSLLKAAEQVALTQPGASKALQEIESTLGVQLFTRTN 66 Query: 69 SGLIPNQFGHCVIRYARLMATDLGSLCEEMAQIRSGRGGRLAIGAVMGALPELVVPAVDA 128 GL P + GHCVIRYARL+ TDL L EEM I G GGRLA+G +MGA+P L+ A+ Sbjct: 67 RGLEPTELGHCVIRYARLIQTDLTHLREEMLAIMQGHGGRLAVGTIMGAVP-LLTDALTR 125 Query: 129 LQRRHPELSIDIVEETSVQLLSRLDEGHLDLLVARASVSDNPGKYHYQPLSEEPLSVVVS 188 L HP LS++IVE+TS +LL LD+G LDL + R S+S P Y + EE L+VV S Sbjct: 126 LLEAHPALSVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEELAVVAS 185 Query: 189 GEHPRPRGRQMSLAALAGYRWVTYPSHMPLHAVLEREMDLAGVSMPGNAISTASTFVTVA 248 +HP + LA LA RWV Y ++MP+ LERE A + P + + T S F T++ Sbjct: 186 VQHPLADAPSLQLADLADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSAFTTLS 245 Query: 249 LLQQGTDMVSILPTAVAEMFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSMAGQAFV 306 LLQ+ V++L VA+ + GM RILP++L + S+ +VTR+G LS + F+ Sbjct: 246 LLQKNPHFVALLSVDVAQFCTRFGMTRILPLRLHTRSEPYQLVTRRGTMLSPVARLFL 303 >gi|300310375|ref|YP_003774467.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 176 bits (445), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 105/299 (35%), Positives = 165/299 (55%), Gaps = 1/299 (0%) Query: 13 LLSRLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTRSGLI 72 L +RL+ +QL LLIALDD +++H+A+S L MTQ AASK L +LE ML LFER G+ Sbjct: 10 LRARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVALFERLPRGMR 69 Query: 73 PNQFGHCVIRYARLMATDLGSLCEEMAQIRSGRGGRLAIGAVMGALPELVVPAVDALQRR 132 P +G +IR+AR+ T L E++ ++SG G++ +G ++ L+ PA+ ++ + Sbjct: 70 PTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMALLPPAIARVKEQ 129 Query: 133 HPELSIDIVEETSVQLLSRLDEGHLDLLVARASVSDNPGKYHYQPLSEEPLSVVVSGEHP 192 P L I + E+S LLSRL G LD ++ R + G Y+ L++EP+ V HP Sbjct: 130 APMLRIGVEVESSNILLSRLLHGELDFIIGRILDDEARGGLLYEELADEPICAVARVGHP 189 Query: 193 RPRGRQMSLAALAGYRWVTYPSHMPLHAVLEREMDLAGVSMPGNAISTASTFVTVALLQQ 252 +SLA LA W+ P L A ++ G++ P N + T + +LLQQ Sbjct: 190 FHARTDLSLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAILFITSLLQQ 249 Query: 253 GTDMVSILPTAVAEMFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSMAGQAFVRLLQE 311 TD + +PT VA + + ++ ILP++L GI+TR+ LS ++ ++E Sbjct: 250 -TDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANLVLQAIRE 307 >gi|300311542|ref|YP_003775634.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 81.3 bits (199), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 136/292 (46%), Gaps = 12/292 (4%) Query: 22 LQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTRSGLIPNQFGHCVI 81 LQ +AL D + A+ ++QSA S + ++E+ A+LFER + G + Sbjct: 10 LQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVTLTPEGELFV 69 Query: 82 RYARLMATDLGSLCEEMAQIRSGRGGRLAIGAVMGALPELVVPAVDALQRRHPELSIDIV 141 + AR + +D+ + +M+ + R GR+AI A+ + P + ++R+P +++++ Sbjct: 70 QVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPGVTVELF 129 Query: 142 EETSVQLLSRLDEGHLDLLVARASVSDNPGKYHYQPLSEEPLSVVVSGEHPRPRGRQMSL 201 + S Q L L G +D +A + N ++ +PL +P +V +H R++ + Sbjct: 130 DAISDQCLDLLRHGKVD--IALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLASKRRIKV 187 Query: 202 AALAGYRWVTYPSHMPLHAVLEREMDLAGVSMPGNAISTA---STFVTVALLQQGTDMVS 258 LAG + H+ + + +D V PG I T TVA L + VS Sbjct: 188 PQLAGCEMI----HLARSTSVRQHLD--AVLRPGGVIHTGLEVEHLATVAALIESGLGVS 241 Query: 259 ILPTAVAEMFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSMAGQAFVRLLQ 310 ++P F ++ I P+ + + + IVT K LS+A Q + L++ Sbjct: 242 VVPELTLFQFRLPNLVAI-PLDAPELKRPLLIVTPKERSLSVAAQGLLELVE 292 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.132 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 897,373 Number of extensions: 36715 Number of successful extensions: 209 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 215 Number of HSP's successfully gapped: 33 Length of query: 316 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 231 Effective length of database: 1,217,395 Effective search space: 281218245 Effective search space used: 281218245 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)