BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0099.p (214 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310699|ref|YP_003774791.1| two component response regulato... 226 8e-61 gi|300311469|ref|YP_003775561.1| oxidative stress resistance two... 68 4e-13 gi|300312680|ref|YP_003776772.1| two component response regulato... 61 8e-11 gi|300313830|ref|YP_003777922.1| response regulator protein [Her... 56 2e-09 gi|300313665|ref|YP_003777757.1| two component transcription reg... 56 3e-09 >gi|300310699|ref|YP_003774791.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 226 bits (577), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 111/212 (52%), Positives = 147/212 (69%) Query: 2 RHDRNACLARFLEDQGHKVSRVMADGEELLAPLQDGDIAIIHVGRASAAGYALTQRLRSS 61 R NA L +L GH + M G L+ P + GDIAI+ +GRA+ + +RLR+ Sbjct: 12 RRQCNAPLREYLRAYGHTLISSMEKGGGLMMPARAGDIAIVDMGRAAGPACEVVRRLRAV 71 Query: 62 NARMGILLLASEHESVTLRIAGLERGADFCEPLPQRLELLNAYIETMLRRVVPQAWQLDV 121 NAR+GILL+A+ E + RI GL GADFCEP+P RL++L YI +LRR+VP WQLD+ Sbjct: 72 NARIGILLIAAPDECIASRILGLNSGADFCEPMPVRLDILMTYINVILRRLVPGVWQLDL 131 Query: 122 AARTLRAPHHDAVEINSREVALLKALASSTRHAADRCAIAHAFGVEWVSFDERVLEKTVS 181 ARTLR P +DA+++N +E+ALL+ LA+++ H A R IA FG +V FDER+LEK VS Sbjct: 132 KARTLRTPSNDALKVNEKEMALLRLLAANSHHLASRSDIAGVFGKPYVDFDERMLEKIVS 191 Query: 182 RLRRKWRDSTMYDLPLRTLHGVGYCFTEAIQA 213 RLRRKWR+S + LPL+TLHG GY F+E IQA Sbjct: 192 RLRRKWRESKLSSLPLQTLHGEGYYFSEPIQA 223 >gi|300311469|ref|YP_003775561.1| oxidative stress resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 253 Score = 68.2 bits (165), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 20/187 (10%) Query: 38 DIAIIHVGRASAAGYALTQRLRSSNARMGILLLASEHESVTLRIAGLERGADFCEPLPQR 97 D+ ++ + G A+ +RLR + + I++L ++ E V RI GLE GAD P P Sbjct: 63 DLLVLDLMLPGEDGLAICRRLRGAGDQTPIIMLTAKGEDVD-RIIGLEMGADDYLPKPFN 121 Query: 98 LELLNAYIETMLRRVVPQA----------------WQLDVAARTLRAPHHDAVEINSREV 141 L A I +LRR P + LD+ RTL+ + D + + + E Sbjct: 122 PRELVARINAVLRRKGPDELPGAPSETPETFEFGDFILDLGTRTLKK-NGDTISLTTGEF 180 Query: 142 ALLKALASSTRHAADRCAIAH-AFGVEWVSFDERVLEKTVSRLRRKWRDSTMYDLPLRTL 200 ++LK A + R R + A G E+ FD R L+ +SRLR+ L ++T+ Sbjct: 181 SVLKVFARNARQPLSREKLMEMARGREYEVFD-RSLDVQISRLRKLIEPDPANPLYIQTV 239 Query: 201 HGVGYCF 207 G+GY F Sbjct: 240 WGLGYVF 246 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 60.8 bits (146), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 11/208 (5%) Query: 9 LARFLEDQGHKVSRVMADGEELLAPLQDGDIAIIHVGRASAAGYALTQRLRSSNARMGIL 68 L+R L G V V +G + L+ + + ++ +G G+ + +R+R++ +L Sbjct: 16 LSRVLNSHGFTVHTV-NNGNDALSQRFNAAVLVLDIGLPGIDGFEVLRRMRAAGNNTPVL 74 Query: 69 LLASEHESVTLRIAGLERGADFCEPLPQRLELLNAYIETMLRRVVPQAWQLDVAARTLRA 128 LL + +++ R+ GLE GAD P L A I+ ++RR PQ QL V +L Sbjct: 75 LLTA-RDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQPAQLTVGGLSLDN 133 Query: 129 PHHDA------VEINSREVALLKALASSTRHAADRCAIAHAFGVEWVSFDERVLEKTVSR 182 A +E++ RE +L+ L + I A F +E VSR Sbjct: 134 ATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGEDFTINAVEVYVSR 193 Query: 183 LRRKWRDSTMYDLPLRTLHGVGYCFTEA 210 +R K DS + +RT+ G GY ++ Sbjct: 194 IRLKIADSGV---AIRTIRGFGYMLEKS 218 >gi|300313830|ref|YP_003777922.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 55.8 bits (133), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 95/223 (42%), Gaps = 22/223 (9%) Query: 9 LARFLEDQGHKVSRVMADGEELLAPLQ----DGDIAIIHVGRASAAGYALTQRLRSSNAR 64 L +LE ++V R+ DG LA Q + + I+ V G+AL + +R + Sbjct: 18 LKAYLEKNQYEV-RLAHDGATFLAEFQRLADELSLVILDVMLPDTDGFALCKAVRRKSNV 76 Query: 65 MGILLLASEHESVTLRIAGLERGAD--FCEPLPQRLELLNAYIETMLRRV------VPQ- 115 I+L AS E T R+ GLE GAD +P R ELL A I+ + RR+ P+ Sbjct: 77 PVIMLTASSDE--TDRVVGLELGADDYIAKPYSPR-ELL-ARIKAIHRRIGIDSSAAPRY 132 Query: 116 ----AWQLDVAARTLRAPHHDAVEINSREVALLKALASSTRHAADRCAIAHAFGVEWVSF 171 + LD RTL D V + + LLK DR + Sbjct: 133 YRFAGFSLDTVERTLVDSQGDIVPLTGMDYQLLKYFVEHPGDVLDRNVLCEETRGRDAGP 192 Query: 172 DERVLEKTVSRLRRKWRDSTMYDLPLRTLHGVGYCFTEAIQAC 214 +R L+ +S+LR + D ++T+ G GY F+ + A Sbjct: 193 LDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVSAA 235 >gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 55.8 bits (133), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 19/186 (10%) Query: 38 DIAIIHVGRASAAGYALTQRLRSSNARMGILLLASEHESVTLRIAGLERGADFCEPLPQR 97 DI I+ + G L + LR R L++ + ++ RI GLE GAD P P Sbjct: 50 DIIILDLMMPGEDGLELCRELRKK--RNTPLVMLTARGTLIDRIVGLEVGADDYLPKPFD 107 Query: 98 LELLNAYIETMLRRV--VPQ-------------AWQLDVAARTLRAPHHDAVEINSREVA 142 L A I+ +LRR P+ W+LD AR +P + + + Sbjct: 108 PRELLARIKVILRRARSFPEKLEADRVSHIHFAGWKLDTQARQAISPSGVTITLGGSDYQ 167 Query: 143 LLKALASSTRHAADRCAIAHA-FGVEWVSFDERVLEKTVSRLRRKWRDSTMYDLPLRTLH 201 +L+AL R A R + + +G E + FD R ++ +SRLR++ D+ +RT+ Sbjct: 168 VLRALLEHPRRALSRDFLLNTVYGKEAMPFD-RSIDVCISRLRQQLGDNPREPALIRTVR 226 Query: 202 GVGYCF 207 GY Sbjct: 227 NTGYML 232 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 664,775 Number of extensions: 25388 Number of successful extensions: 144 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 7 Length of query: 214 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 133 Effective length of database: 1,236,335 Effective search space: 164432555 Effective search space used: 164432555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)