BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0096.p (896 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310697|ref|YP_003774789.1| two component hybrid sensor his... 931 0.0 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 174 4e-44 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 145 2e-35 gi|300313022|ref|YP_003777114.1| two component sensor histidine ... 127 5e-30 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 123 8e-29 >gi|300310697|ref|YP_003774789.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 916 Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/884 (57%), Positives = 631/884 (71%), Gaps = 13/884 (1%) Query: 19 SIELAGIASRLVITPQVHVLRDADGRAVLTAVLDSTQWETIAVPMLQEGYSNAAFWLRGT 78 SI+ A + IT + +L D + W + V +L+ GY A+WL GT Sbjct: 33 SIDFAQVGEAATITSALWLLHDPGAHLGVQEARAQPDWRPVGVSVLKLGYDEGAYWLYGT 92 Query: 79 VRNDSSQPVTRWLTLASARLQDVRLYWLPATPGEAAPAAITPLSVGTLHALAQREIISRT 138 +RN + PVTRWL L SARL+DV+L+ L G A A GT L QR + S Sbjct: 93 LRNAAEVPVTRWLGLGSARLEDVQLHLLDTDHGGDASAPAQMQQAGTRFPLGQRSVRSLR 152 Query: 139 PLFALTLAPGEQRQWVLRVAGESSIDLNLALWEPAAYREEEGRELAIQAFVLGGALLLVS 198 P F +TLAPGE+RQ++LRVA +S ID+++ALWEPAA R+EEGRELAIQ F+LG +LLL + Sbjct: 153 PFFTVTLAPGEERQFMLRVASDSIIDISVALWEPAAMRQEEGRELAIQGFLLGLSLLLAA 212 Query: 199 YALIQGIAWRDRGFLLMAAWILIALAYIWTFQGYLYRYLFSAGGAWQVRAPATLGCAATL 258 YAL+QG+ WRDR +LMAAW++ A AYI FQGYLYRYL AG W V APATLGC ATL Sbjct: 213 YALVQGLVWRDRSLMLMAAWLVTAQAYICAFQGYLYRYLLEAGSPWIVHAPATLGCLATL 272 Query: 259 LYVRMSEVLVGMERLRGWQIVYRTLYVLLSVIIGWTALGDYRVTAPLANAAGALAYVIWL 318 +Y+RMS+ LV +E+L W+ +YR + + L + WTALGDYR AP+ANA+ L+Y+ WL Sbjct: 273 IYLRMSQSLVELEQLWRWKTLYRCMILALGGVTLWTALGDYRDAAPVANASAGLSYLAWL 332 Query: 319 ASMLHAWWHGLPHARLLTLSFAVAWLGLSVKLLELNGLVDRSLLPDWHFAALFQMGLLCL 378 ASMLHAW L +AR+L LSFA+AWL +S+K+LELNG+ D LLPDW FAALFQ+GLLC+ Sbjct: 333 ASMLHAWRRRLDNARMLVLSFALAWLAMSMKMLELNGVFDGDLLPDWRFAALFQIGLLCM 392 Query: 379 ATVAIIGRALELHRKHEQMQWAMLYMRVREQLKLEQAVVARTRDLREALAAADQANRAKT 438 +V + GRA++LHRKHEQMQW MLY+RVREQLKLE+AV ART++LR+AL AAD+AN AK+ Sbjct: 393 TSVIVTGRAVDLHRKHEQMQWTMLYLRVREQLKLEKAVAARTQELRQALQAADEANLAKS 452 Query: 439 GFLTRISHDLRTPLTSILGFADMLQTGGGERARHGRIIVRSARHMLAMVNDLIDYARGDR 498 GFLTRISHDLRTPLTSILGFADM+Q GG A HGRII+RSARHML MVNDLIDYARGD Sbjct: 453 GFLTRISHDLRTPLTSILGFADMIQASGGPHAGHGRIIMRSARHMLTMVNDLIDYARGDP 512 Query: 499 PDLPHAAPVYAHALLQEIGQEAALLAERQHNSFHLQVDPTLPPVLAIDARRLRRILGNLL 558 D P P+Y HALLQEI QE +LA+RQHN F L + P LPPVLA+DARRL RILGNLL Sbjct: 513 LDTPQPTPLYLHALLQEIAQEGQVLAQRQHNHFTLDISPDLPPVLALDARRLHRILGNLL 572 Query: 559 DNAAKYTRDGRIVLQILWHPASAKSEMGVMEMQVRDTGSGIPAHFQTRVFEPFERANADR 618 DNAAKYTR+GRI L + W A + G ++++V DTG GI FQ+R+FEPFERA+ADR Sbjct: 573 DNAAKYTREGRIGLHVQWQADHADAGKGALQIEVSDTGCGIAPQFQSRIFEPFERADADR 632 Query: 619 SQPGIGMGLSIVRQWMQQMGGQVMLSSRPGEGTTMTLRLPAAISSERDIARHDAPEDANG 678 QPGIGMGL+IVR W+Q+MGG ++L S+PG GT M L+LPA SE+DIA H E ++ Sbjct: 633 RQPGIGMGLAIVRLWVQRMGGSIVLESQPGMGTRMHLQLPAERGSEQDIASHHVQEHSST 692 Query: 679 RLLIDGQGRLALVVEDHADIAQLLGDQLASVGFAVELLADAESAIARIAL----PEAPAL 734 R+LIDG GR +VVED +IA+LL DQL+S+GFAV + D E+AIA ++ EAP Sbjct: 693 RVLIDGAGRQVVVVEDSPEIARLLSDQLSSLGFAVSVFGDGETAIAHLSALTMDQEAP-- 750 Query: 735 ALVLTDYQLPGLHGDAVLQAVRRHLPQVPVLLLSATLQPAPSDEPGK-RFDACLLKPVNF 793 ALVLTDY LPG+HG AVLQA RR LP+VPVLLLSATL + G RFD LLKPVNF Sbjct: 751 ALVLTDYLLPGVHGGAVLQAARRLLPEVPVLLLSATLHACEVELDGDLRFDGSLLKPVNF 810 Query: 794 LELQETIGRLLGL----HPEAAPAGDDAAPLPLQHPPPEELQQALALIAMGAVSDLLDWC 849 ELQE I +LL L ++ + + + PP LQ ALA+IA GAVSDL+DWC Sbjct: 811 SELQEMIAQLLQLPLLGSTASSASSGGSVGEVVAMPPEALLQAALAMIADGAVSDLIDWC 870 Query: 850 DTLQQQNPAYESFAVLARQWVITADLDRLEALCRDDQAMRQETA 893 +TL ++P F A + + L RL A+C +QA+ + TA Sbjct: 871 ETLGHEHPQCSQFQAQALEQISQGHLARLRAMC--EQALSERTA 912 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 158/490 (32%), Positives = 245/490 (50%), Gaps = 48/490 (9%) Query: 422 DLREALAAADQANRAKTGFLTRISHDLRTPLTSILGFADMLQTGGG---ERARHGRIIVR 478 +L+ A AA+ AN AK+ F+ +SH+LRTPL SILG+A +L R +I R Sbjct: 673 ELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKDAIGVIRR 732 Query: 479 SARHMLAMVNDLIDYARGDRPDLPHAAPVYA-HALLQEIGQEAALLAERQHNSFHLQVDP 537 S H+L++++ L+D A+ + + A+ A A L++I A AE++ F Sbjct: 733 SGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLHFRFDKSG 792 Query: 538 TLPPVLAIDARRLRRILGNLLDNAAKYTRDGRIVLQILWHPASAKSEMGVMEMQVRDTGS 597 LP ++ D +RLR+IL NLL NA K+T G + L++ + + V DTG Sbjct: 793 RLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRL-------RYAREIAYFDVIDTGI 845 Query: 598 GIPAHFQTRVFEPFERANAD--RSQPGIGMGLSIVRQWMQQMGGQVMLSSRPGEGTTMTL 655 GI + R+F PFER++A R G G+GL+I R + MGG++ + S+ G+G++ L Sbjct: 846 GIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSVQSQVGQGSSFHL 905 Query: 656 R--LPAAISSERDIARHDAPEDANGRLLIDGQGRLALVVEDHADIAQLLGDQLASVGFAV 713 + LP I D G R LVV+D A +LL D L +GF V Sbjct: 906 KIYLPEVHVPRPRIKLEDQMSG------YAGPSRHILVVDDQASQRRLLKDMLMPLGFTV 959 Query: 714 ELLADAESAIARI-----ALPEAPALALVLTDYQLPGLHGDAVLQAVR-RHLPQVPVLLL 767 ++A+S +A + ALP+ LVL D +P + G +V +A+R R L Q+P+LL+ Sbjct: 960 ---SEADSGLACMETLGHALPD-----LVLLDIAMPQMDGWSVARAIRARGLAQLPILLV 1011 Query: 768 SATL--QPAPSDEPGKRFDACLLKPVNFLELQETIGRLLGLH------PEAAPAGDDAAP 819 SA +EP D ++KPV++ EL I + L L A A Sbjct: 1012 SANAFENLHERNEPPLVND-FVVKPVSYHELLGKIRQHLQLDWVAAADAPTPAAPPPAPQ 1070 Query: 820 LPLQHPPPEELQQALALIAMGAVSDLLDWCDTLQQQNPAYESFAV----LARQWVITADL 875 + P E+L L L ++G +++ D L++Q+PAY F L RQ+ + + Sbjct: 1071 ALMLVPTQEKLATLLELGSIGYAKEIVRQLDALERQDPAYLPFTTELRQLVRQFRLNEYV 1130 Query: 876 DRLEALCRDD 885 R++ L R D Sbjct: 1131 TRIKELIRHD 1140 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 138/474 (29%), Positives = 218/474 (45%), Gaps = 69/474 (14%) Query: 386 RALELHRKHEQMQWAMLYMRVREQ---LKLEQAVVARTRD-LREALAAADQANRAKTGFL 441 +A +L + +Q + ++ EQ L+L++ +A+T+ L E ++AN+ K+ FL Sbjct: 420 KASQLRLETQQAELEETNAQLEEQTQLLELQKDDLAKTQVVLVEKATELERANQYKSEFL 479 Query: 442 TRISHDLRTPLTSILGFADMLQTG-----GGERARHGRIIVRSARHMLAMVNDLIDYAR- 495 +SH+LRTPL S L A +L E+ R + I + +LA++ND++D ++ Sbjct: 480 ANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKM 539 Query: 496 --GDRPDLPHAAPVYAHALLQEIGQEAALLAERQHNSFHLQVDPTLPPVLAIDARRLRRI 553 G +P + P+ L E+ A+ A+++ F ++V+P +P + D +RL +I Sbjct: 540 EAGKLDIVPESFPLTK--LADELSASFAITAQQKGLGFKVEVEPGVPQRMETDIQRLGQI 597 Query: 554 LGNLLDNAAKYTRDGRIVLQILWHPASAKSEMGVMEMQVRDTGSGIPAHFQTRVFEPFER 613 L NLL NA K+T G + L+I +P + G + VRDTG GI +FE F + Sbjct: 598 LKNLLSNAIKFTEKGEVSLRI--YPDAG----GRIAFAVRDTGIGIGEDQHQFIFEAFRQ 651 Query: 614 ANAD--RSQPGIGMGLSIVRQWMQQMGGQVMLSSRPGEGTTMTLRLPAAISSER------ 665 A+ R G G+GLSI R +GG + ++SR GEG+ TL LP SSE+ Sbjct: 652 ADGSTHRKYGGTGLGLSISRDLAHLLGGDIRVTSRLGEGSIFTLSLPPLYSSEQAVSNTA 711 Query: 666 -----------------------DIARHDAPEDA-----------NGRLLIDGQGRLALV 691 D+ + P A + R I+ RL LV Sbjct: 712 PEPTPAAAAAASTLQAAHVATAPDVRINRTPAAAAPQRLQEISIDDDRDRIETSSRLILV 771 Query: 692 VEDHADIAQLLGDQLASVGFAVELLADAESAIARIALPEAPALALVLTDYQLPGLHGDAV 751 +ED A A +L D +GF + A +A + A +L D LP G V Sbjct: 772 IEDDAAFAMILRDLAREMGFQCVVTHSANEGVAAAEMYRPSA---ILMDMNLPDFSGLGV 828 Query: 752 LQAVRRH--LPQVPVLLLSATLQPAPSDEPGKRFDACLLKPVNFLELQETIGRL 803 L ++R+ +PV ++S + E G A LKPV EL I +L Sbjct: 829 LDQIKRNPKTRHIPVHVVSVADYSHEAMERGAIGYA--LKPVQREELIGAIRKL 880 >gi|300313022|ref|YP_003777114.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 556 Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 134/244 (54%), Gaps = 15/244 (6%) Query: 420 TRDLREALAAADQANRAKTGFLTRISHDLRTPLTSILGFADMLQTGGGER--ARHGRIIV 477 R REAL QAN+AK+ FL+ +SH+ RTPL +LG++D L+ GE A++ I Sbjct: 318 VRSRREAL----QANQAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYAVAIH 373 Query: 478 RSARHMLAMVNDLIDYAR-GDRPDLPHAAPVYAHALLQEIGQEAALLAERQHNSFHLQVD 536 S +L +VN +++ DR H P L+ + A+ + ++ Sbjct: 374 DSGNRLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRIG 433 Query: 537 PTLPPVLAIDARRLRRILGNLLDNAAKYTRDGRIVLQILWHPASAKSEMGVMEMQVRDTG 596 +P +L D R+++R+L NL+ NA +YT GR+++++ +S + M+++DTG Sbjct: 434 EDVPQILVCDERKIQRVLDNLISNAVRYTDHGRVMVEV------ERSGPQQLTMRIKDTG 487 Query: 597 SGIPAHFQTRVFEPFERANAD--RSQPGIGMGLSIVRQWMQQMGGQVMLSSRPGEGTTMT 654 GI A Q +FE F +A+ RSQ G G+GL+I ++ + MGGQ++L S +G+T + Sbjct: 488 IGIAASQQNDIFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFS 547 Query: 655 LRLP 658 LP Sbjct: 548 FTLP 551 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 123 bits (308), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 107/358 (29%), Positives = 178/358 (49%), Gaps = 18/358 (5%) Query: 418 ARTRD-LREALAAADQANRAKTGFLTRISHDLRTPLTSILGFADMLQTG--GGERARHGR 474 ART + L +A AAD A + FL+ +SH++RTP+ ++LG A +L++ ++A + Sbjct: 67 ARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTRLDTQQAEFAK 126 Query: 475 IIVRSARHMLAMVNDLIDYARGDRPDLPHAAPVYAHALLQEIGQEAALLAERQHNSFHL- 533 I SA +L +VND++D+++ D + A + A + E EA R+ L Sbjct: 127 AIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEASAEALSFKAREKRVRLLA 186 Query: 534 QVDPTLPPVLAIDARRLRRILGNLLDNAAKYTRDGRIVLQILWHPASAKSEMGVMEMQVR 593 +D LPP L D R+R+IL NLL NA K+T G ++L++ S+ + +VR Sbjct: 187 HLDSRLPPRLVGDPGRIRQILLNLLGNALKFTHAGEVLLRV--QALQVTSDHCRVRFEVR 244 Query: 594 DTGSGIPAHFQTRVFEPFERANAD--RSQPGIGMGLSIVRQWMQQMGGQVMLSSRPGEGT 651 D+G G+ R+F PF +A++ R G G+GLSI ++ ++ MGG + + S G G+ Sbjct: 245 DSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVESALGTGS 304 Query: 652 TMTLRLPAAISSERDIARHDAPEDANGRLLIDGQGRLALVVEDHADIAQLLGDQLASVGF 711 L +++ + R + P R R+AL VE H A +L + L S Sbjct: 305 CFWFELGIPVTTGPGMIRSEPPAADRPR-------RIAL-VEPHDASAAMLHEYLRSAAL 356 Query: 712 AVELLADAESAIARIALPEAPALAL--VLTDYQLPGLHGDAVLQAVRRHLPQVPVLLL 767 A A+A + P A A + V+ Q+ L +V+ ++ P + +LL Sbjct: 357 ETLRFGSASDALAALTGPGASASGIDAVIVSTQVQDLDAVSVMARLQAERPALRRVLL 414 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,789,784 Number of extensions: 116507 Number of successful extensions: 698 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 624 Number of HSP's successfully gapped: 44 Length of query: 896 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 802 Effective length of database: 1,174,780 Effective search space: 942173560 Effective search space used: 942173560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 135 (56.6 bits)