BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0093.p (349 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 515 e-147 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 382 e-107 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 381 e-107 gi|300310885|ref|YP_003774977.1| methyl-accepting chemotaxis tra... 379 e-106 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 370 e-103 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 515 bits (1327), Expect = e-147, Method: Compositional matrix adjust. Identities = 292/364 (80%), Positives = 314/364 (86%), Gaps = 24/364 (6%) Query: 1 VAGGDLTARIDVRSRDETGELLSALKDMNASLVTIVSGVRRGTDMIATASSQIASGNLDL 60 VA GDLTARI+VRSRDETG LL ALKDMN SLV IVSGVRRGT+MIATASS+IA+GNLDL Sbjct: 231 VASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDL 290 Query: 61 SSRTEQQASSLEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETM 120 SSRTEQQASSLEETASSMEELTSTVQQN+ANAREANRMAQAASDIASSGGGVV+RVV+TM Sbjct: 291 SSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTM 350 Query: 121 EEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 180 EEIN SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA Sbjct: 351 EEINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 410 Query: 181 AAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIE 240 AAAKEIKALISDSVAKVESGS+LVNEAGDTMREIVESVQRVT MINEISAAGEEQRSGIE Sbjct: 411 AAAKEIKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIE 470 Query: 241 QVSQAVGHMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRLDAQAAQEMAIDVAA 300 QVSQAVG MDQVTQQNAALVE+AAAASQSLQEQAQELAQAVSVFRL+A A E+A + Sbjct: 471 QVSQAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQALEVAPE--- 527 Query: 301 AAVTPAPAAIKKAPATIKPRIAPREPRLSAP------------XPVP---SRSLAGASDE 345 PAPA++ + + ++P A R RL +P P P SR + +DE Sbjct: 528 ----PAPASVAASRSGVRP--ATRSSRLPSPVGPSASPSASPMHPAPASGSRLSSADADE 581 Query: 346 WVTF 349 WVTF Sbjct: 582 WVTF 585 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 382 bits (980), Expect = e-107, Method: Compositional matrix adjust. Identities = 225/353 (63%), Positives = 263/353 (74%), Gaps = 19/353 (5%) Query: 1 VAGGDLTARIDVRSRDETGELLSALKDMNASLVTIVSGVRRGTDMIATASSQIASGNLDL 60 +A GDLTA I RS DETG+L +AL MN SL IVS VR GTD IATAS QI+SGNLDL Sbjct: 230 IAAGDLTADITARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDL 289 Query: 61 SSRTEQQASSLEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETM 120 SSRTE+QASSLEETAS+MEELTSTV+QN+ NAR+AN++A +AS IA GG VVS+V+ETM Sbjct: 290 SSRTEEQASSLEETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETM 349 Query: 121 EEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 180 I+ASS+KIVDIISVID IAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA Sbjct: 350 GSIDASSKKIVDIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 409 Query: 181 AAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIE 240 AAKEIK LI +SV +V GS LV +AG T+ E+V SVQRVT +++EISAA EQ GIE Sbjct: 410 TAAKEIKTLIDNSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIE 469 Query: 241 QVSQAVGHMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRLDAQAAQE----MAI 296 QV+QA+ MD+VTQQNAALVEEAA+ASQSL QAQ L++ V VFRL A Q+ + Sbjct: 470 QVNQAITQMDEVTQQNAALVEEAASASQSLSHQAQRLSELVGVFRLPGAARQQVPEVAVV 529 Query: 297 DVAAAAVTPAPAAIKKAPATIKPRIAPREPRLSAPXPVPSRSLAGASDEWVTF 349 AA A TP A+ A +T P +A + G ++W TF Sbjct: 530 ATAAPAYTPRRPAVAGATSTATPALAVAQ---------------GPDEQWETF 567 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 381 bits (979), Expect = e-107, Method: Compositional matrix adjust. Identities = 225/351 (64%), Positives = 269/351 (76%), Gaps = 2/351 (0%) Query: 1 VAGGDLTARIDVRSRDETGELLSALKDMNASLVTIVSGVRRGTDMIATASSQIASGNLDL 60 VA GDLT RI+ SRDETG+L+ AL+ MN +L+ IVSGVRRGT+ I TAS +IASGNLDL Sbjct: 231 VAAGDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDL 290 Query: 61 SSRTEQQASSLEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETM 120 S+RTEQQA SLEETAS+MEE+TSTV+QN+ NAR+AN+MA +AS+IA GG +V RVV TM Sbjct: 291 SARTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTM 350 Query: 121 EEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 180 +EIN SSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA Sbjct: 351 DEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 410 Query: 181 AAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIE 240 AAAKEIKALI+DSV KVE GS LV +AG TM ++V SV+ VT ++ EISAA EQ SGIE Sbjct: 411 AAAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIE 470 Query: 241 QVSQAVGHMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRLDAQAAQEMAIDVAA 300 ++++AV MD+ TQQNAALVE+AAAA++S+QEQA L Q++S+F+L+ AA A V Sbjct: 471 EINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAPVRT 530 Query: 301 AAVTPAPAAIKKAPATIKPRIAPREPRLSAPXPVPSRSLAGASDE--WVTF 349 A APA T +PR++P P+ DE W TF Sbjct: 531 ALAPAAPAPTASRAPTARPRVSPAITAAPTVAAAPALKAPARVDEDAWETF 581 >gi|300310885|ref|YP_003774977.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 551 Score = 379 bits (973), Expect = e-106, Method: Compositional matrix adjust. Identities = 215/295 (72%), Positives = 250/295 (84%) Query: 1 VAGGDLTARIDVRSRDETGELLSALKDMNASLVTIVSGVRRGTDMIATASSQIASGNLDL 60 VA GDLT I S DETGELL AL++MN++LV IV+ VR G D IATAS +IA+GN DL Sbjct: 257 VANGDLTKDIRDNSPDETGELLVALREMNSALVDIVTNVRTGADTIATASQEIAAGNQDL 316 Query: 61 SSRTEQQASSLEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETM 120 S+RTE QASSLEETASSMEELTSTVQQNSANAR+A MAQ+AS IA GG +V VV TM Sbjct: 317 SARTEHQASSLEETASSMEELTSTVQQNSANARQAAEMAQSASGIAGQGGELVGDVVATM 376 Query: 121 EEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 180 ++I+AS+RKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA Sbjct: 377 DDIDASARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 436 Query: 181 AAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIE 240 AAAKEIK LI DSV KV+SG+ LV +AG TM+EIV+SV +V +IN+IS AGEEQR+GIE Sbjct: 437 AAAKEIKVLIGDSVEKVDSGAHLVKKAGQTMQEIVKSVAQVNAVINQISNAGEEQRAGIE 496 Query: 241 QVSQAVGHMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRLDAQAAQEMA 295 QV+QA+ MD+VTQQNAALVE+AAAAS+++Q QA +LA+ VS+FRL AQA M+ Sbjct: 497 QVNQAITQMDEVTQQNAALVEQAAAASRAMQTQAADLAEKVSIFRLPAQARSAMS 551 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust. Identities = 210/286 (73%), Positives = 245/286 (85%) Query: 1 VAGGDLTARIDVRSRDETGELLSALKDMNASLVTIVSGVRRGTDMIATASSQIASGNLDL 60 VA GDL++ I V SRDETG+LL +LKDMN SL IVS VR GTD I+TASS+IA+GNLDL Sbjct: 229 VAEGDLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDL 288 Query: 61 SSRTEQQASSLEETASSMEELTSTVQQNSANAREANRMAQAASDIASSGGGVVSRVVETM 120 SSRTEQQASSL ETAS+MEEL STV+QN+ NAR+A+++A +AS +A GGGVVS+VV+TM Sbjct: 289 SSRTEQQASSLAETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTM 348 Query: 121 EEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 180 INASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA Sbjct: 349 GAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA 408 Query: 181 AAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVESVQRVTGMINEISAAGEEQRSGIE 240 +AAKEIK LI+DSV KV+ GS LV +AG+TM+E+V SV+RVT ++ EISAA EQ GIE Sbjct: 409 SAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIE 468 Query: 241 QVSQAVGHMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSVFRL 286 Q++ A+ MDQVTQQNAALVEEAAAA+ S+Q QA L Q VSVFRL Sbjct: 469 QINLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.308 0.120 0.300 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 579,221 Number of extensions: 15411 Number of successful extensions: 482 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 210 Number of HSP's successfully gapped: 72 Length of query: 349 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 263 Effective length of database: 1,212,660 Effective search space: 318929580 Effective search space used: 318929580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 131 (55.1 bits)