BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0092.p (231 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 308 3e-85 gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis tra... 105 5e-24 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 85 4e-18 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 60 2e-10 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 308 bits (789), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 144/229 (62%), Positives = 192/229 (83%) Query: 1 MKISDLKIGTRLYIGFGLVSAILVILVSVAYANFARLGVATDMNIHSYEARAEMQAMLES 60 MK++DLKIGTRLY+GFGLV+AILVILVSVAY NFARLG A ++N+H+YE RA+++AM ES Sbjct: 1 MKLADLKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVHTYEVRAQLRAMAES 60 Query: 61 LINMETGTRGFALTGNEASLEPMQQGLASFKTHLDKARQLTVDNPTQQQRLQQVAEAEQR 120 LIN+ETG RGF+L+G +ASLEP G+ +FKT L+K R LT DN QQQRLQ+++++EQR Sbjct: 61 LINIETGQRGFSLSGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQRLQELSDSEQR 120 Query: 121 WVSTAIEPTIALRRAVRDGREDMSKLVALVQAGRGKAEMDNMRAIFAEMDRMESSLQQER 180 W+ +AI+P I LRRAVR+GRE M+ +VA QAG+GK++MD+MR + ++DR ES+L ER Sbjct: 121 WLKSAIDPAIELRRAVREGREQMAAVVAFEQAGKGKSQMDSMRVLLDDLDRTESALLGER 180 Query: 181 SDQADALEALTGKTLIIGGVVAVVLALLLAWWLANNITRPLAVAVRPAR 229 +++A AL ++T TLI GG +A++LA+LLAWWLANNITRPLA+AV+ AR Sbjct: 181 AEEAAALRSVTSTTLIGGGAIALMLAVLLAWWLANNITRPLALAVQLAR 229 >gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 105 bits (261), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 109/220 (49%), Gaps = 10/220 (4%) Query: 6 LKIGTRLYIGFGLVSAILVILVSVAYANFARLGVATDMNIHSYEARAEMQAMLESLINME 65 + +G +L + F V + ++ S++ NF RL A+ MNIH+Y+ + ML +++N+E Sbjct: 5 MTVGRKLGLAFLCVVVVALVGSSLSLLNFNRLEDASAMNIHTYQVMGKADDMLLNMVNIE 64 Query: 66 TGTRGFALTGNEASLEPMQQGLASFKTHLDKARQLTVDNPTQQQRLQQVAEAEQRWVSTA 125 TG RG+ +GNEA L+P + G FK D A+ LT DNP QQ+RL AE + +S Sbjct: 65 TGIRGYVASGNEAFLDPYKGGRKDFKVAFDDAKSLTADNPVQQKRL-----AEMQELSNK 119 Query: 126 IEPT----IALRRAVRDGREDMSKLVALVQAGRGKAEMDNMRAIFAEMDRMESSLQQERS 181 IE I LR+ + L A K MD R + E E SL +ER Sbjct: 120 IEEIDQNLIKLRKEA-NASGSQQALQTYFGATHDKIFMDRFRVVQKEFVDAEESLLKERG 178 Query: 182 DQADALEALTGKTLIIGGVVAVVLALLLAWWLANNITRPL 221 + +L T +I G + V+LA+ + +I L Sbjct: 179 ELVRSLSKSTLIVMIAAGALTVLLAIGAGLLITRSIINAL 218 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 85.1 bits (209), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 8/197 (4%) Query: 14 IGFGLVSAILVILVSVAYANFARLGVATDMNIHSYEARAEMQAMLESLINMETGTRGFAL 73 IGF + +V++ Y G A + H+ + R ++Q+++ +L + ET RG+ L Sbjct: 21 IGFAVAILAVVLIALFTYEASVSRGQAANAVSHTMKVREQLQSLVSTLKDAETSQRGYLL 80 Query: 74 TGNEASLEPMQQGLASFKTHLDKARQLTVDNPTQQQRLQQVAEAEQRWVSTAIEPTIALR 133 TG E+ L P Q A+ + + R L DNP Q QRL Q+ + E TI LR Sbjct: 81 TGTESYLSPYNQARAALPGEIARLRALLADNPDQLQRLSQIEGITNDKLQELAE-TIDLR 139 Query: 134 RAVRDGREDMSKLVALVQAGRGKAEMDNMRAIFAEMDRMESSLQQERSDQADALEALTGK 193 R + D + +A+VQ+ RGK MD +R + EM+ E L R Q+D +A++ Sbjct: 140 R-----KGDAAAALAVVQSDRGKMSMDRVRTLAREMEGEERDLLAAR--QSDWRDAVSFS 192 Query: 194 TLIIGGVVAVVLALLLA 210 T + G ++L L++A Sbjct: 193 TAVAWGGSGLLLVLIVA 209 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 59.7 bits (143), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 115/240 (47%), Gaps = 27/240 (11%) Query: 1 MKISDLKIGTRLYIGFGLVSAILVILVSVAYANFARLGVATDMNIHS-YEARAEMQAMLE 59 M+ ++L I TRL I F ++ ++ +V++ A A + A D+ ++ Y+ A + + Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 60 SLINMETGTRGFALTGNEASLEPMQQGLASFKTHLDK-ARQLT--VDNPTQQQRLQQVAE 116 + ++ R L + A + Q+ + S K +LT V NP + +L +V E Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTE 120 Query: 117 AEQRWVSTAIEPTIALRRAV----RDGREDMSKLVALVQAGRGKAEMDNMRAI-FAEMDR 171 + + ALR+ + G +D + + L +EM ++ I F+++D Sbjct: 121 TRKSYA--------ALRKQIDKLQSSGDKDAAIKLML-------SEMVPLQKIYFSQLDE 165 Query: 172 MESSLQQ---ERSDQADALEALTGKTLIIGGVVAVVLALLLAWWLANNITRPLAVAVRPA 228 + + Q+ + DQA+A T ++I GV+A A +AW ++ +ITRPL+ AV A Sbjct: 166 LSDTQQKLMDQSVDQAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVA 225 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.131 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 525,158 Number of extensions: 17889 Number of successful extensions: 118 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 6 Length of query: 231 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 149 Effective length of database: 1,231,600 Effective search space: 183508400 Effective search space used: 183508400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)