BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0091.p
         (332 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310694|ref|YP_003774786.1| MerR-family transcription regul...   361   e-101
gi|300309757|ref|YP_003773849.1| hypothetical protein Hsero_0416...   149   4e-37

>gi|300310694|ref|YP_003774786.1| MerR-family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 330

 Score =  361 bits (926), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/318 (61%), Positives = 231/318 (72%), Gaps = 6/318 (1%)

Query: 18  ELSDLPLLRPGAVARQLGMAVETLRAWEHRYGITSSQHSGGGQRLYSQEDMQRLVWIKTL 77
           EL++LPLLRPGAVARQLGM+VETLRAWE+RYG+TSS HSGGGQRLYSQED+QRL  IK L
Sbjct: 11  ELNELPLLRPGAVARQLGMSVETLRAWENRYGLTSSHHSGGGQRLYSQEDVQRLAHIKRL 70

Query: 78  VDAGHRIGKLATLSPRDLQALAQSLPAEGSGSHERQAGPATRLALVGPWIATKAVGQALA 137
           VD GHRIG+LA L    L++L  S  A G       AG   RL L GPWI++    +AL 
Sbjct: 71  VDEGHRIGQLAALPLEALKSLDPSPEAAGPAGQTTLAG--LRLVLAGPWISSTGCIEALR 128

Query: 138 HRQLSVIMAVESLDELDLRQFEGD----LLLLESTVLDSDLDQRLEGLRRDGVQVPVLIL 193
            +Q SV  AV+ L+EL       D    LLL+ES VLD  L  R+E +RR      V+IL
Sbjct: 129 QQQASVSAAVQDLEELRQSSLGLDTGVALLLVESAVLDPGLGGRMESVRRSFASARVVIL 188

Query: 194 YRFGSPEMVVRLREAGHRVVRKAVEGIDVEWLCEMIRRMEPAAAQTPGEDEWVPEPRFSE 253
           YRFGSPEMV RL +AGH++VRK ++GID  WLCE++RR++    +   +   VP PRFSE
Sbjct: 189 YRFGSPEMVARLTQAGHQLVRKPMDGIDPAWLCELVRRLDLPPGEVQMDSPDVPAPRFSE 248

Query: 254 SALASVSDQSDRMQCECPRHLAELLTALAGFERYSRQCEDDTTEEAELHRELRIAAGRAR 313
           + LA VS  S RMQCECPRHLAELLTAL GFERYSRQCED++ EEA LHREL +AAGRAR
Sbjct: 249 AELAQVSQASTRMQCECPRHLAELLTALVGFERYSRQCEDESEEEAALHRELCLAAGRAR 308

Query: 314 LPLEDALQKLARFKGISL 331
           LPLE+ LQ+LA+ KGISL
Sbjct: 309 LPLEETLQRLAQVKGISL 326


>gi|300309757|ref|YP_003773849.1| hypothetical protein Hsero_0416
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  149 bits (375), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 171/343 (49%), Gaps = 29/343 (8%)

Query: 8   SSPAPAAETAELSD------LPLLRPGAVARQLGMAVETLRAWEHRYGITSSQHSGGGQR 61
           + P P A T+  S        PL R GAVAR L M V TLR WE RY +T  Q S  GQR
Sbjct: 2   TEPIPTAPTSSTSSPEEKGPAPLRRTGAVARMLRMPVATLRVWERRYALTQGQLSPSGQR 61

Query: 62  LYSQEDMQRLVWIKTLVDAGHRIGKLATLSPRDLQALAQSLPAEGSGSHERQAGPAT--- 118
           LYS+ D++RL  I+ L + GH IG LA L    LQ +A +         E  AG  T   
Sbjct: 62  LYSEADVRRLALIRQLTELGHAIGSLAGLDMEQLQQVAAT-------HAELHAGRPTPPE 114

Query: 119 ------RLALVGPWIATKAVGQALAH---RQLSVIMAVESLDE--LDLRQFEGDLLLLES 167
                 RLA++G  +A +     L     R L ++   E++++  + L++ E D LLL  
Sbjct: 115 AVQGRWRLAVIGSTLAQRLDKPGLLQRLGRPLQLLGPFENIEQAAMALKREEVDALLLHE 174

Query: 168 TVLDSDLDQRLEGLRRDGVQVPVLILYRFGSPEMVVRLREAGHRVVRKAVEGIDV-EWLC 226
             L +     LE        +P+ +LY F S  +   L   G  ++R     + + +WL 
Sbjct: 175 PQLHAGWLGALESSAPALSGLPMAVLYGFASEAVCETLAAVGISLLRAPQPDVVILQWLR 234

Query: 227 EMIRRMEPAAAQTPGEDEWVPEPRFSESALASVSDQSDRMQCECPRHLAELLTALAGFER 286
            ++    PA  +       +P  R+S++ L + ++QS  + CECPRH+AELL  L+ FER
Sbjct: 235 GLVALSSPAREEM-AAGTVLPPRRWSDNQLIAFANQSTTVACECPRHVAELLMQLSQFER 293

Query: 287 YSRQCEDDTTEEAELHRELRIAAGRARLPLEDALQKLARFKGI 329
           YS QC +    +A+LH+ L+     +R   E AL ++A  +G+
Sbjct: 294 YSAQCANRNVADAQLHQYLQQLTSESRQRFEMALTRIAEHEGL 336


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,046,526
Number of extensions: 44265
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,212,660
Effective search space: 298314360
Effective search space used: 298314360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)