BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0090.p (229 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 310 7e-86 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 260 5e-71 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 251 3e-68 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 249 2e-67 gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 231 3e-62 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 310 bits (793), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 183/229 (79%), Positives = 200/229 (87%) Query: 1 MSQINDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 60 M QINDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS Sbjct: 348 MGQINDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 407 Query: 61 AAAAKEIKTLIDASVERVENGSRLVEQAGTTMDEVVASVKRVTDVVAEITAASGEQSDGI 120 AAAAKEIK+LIDASVERVE+GSRLV QAG TM+EVVASVKRVTDVVAEITAASGEQSDGI Sbjct: 408 AAAAKEIKSLIDASVERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGI 467 Query: 121 EQINQAIVQMDEVTQQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSNHETRRQAPMAA 180 EQINQAIVQMDEVTQQNAALVE+AAAAAQSLQEQSGRL +TV IF+L N + +P++A Sbjct: 468 EQINQAIVQMDEVTQQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPSPLSA 527 Query: 181 AAKRTVDVTPRTAALPRKPAAKASAPAKALPVAQPALKPAAAEGDWEQF 229 +R+V V P L RKP + SAPAK++P AQP + A A+G WEQF Sbjct: 528 PVQRSVQVAPARPVLARKPVTRTSAPAKSIPAAQPVAQAALADGQWEQF 576 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 260 bits (665), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 176/253 (69%), Positives = 190/253 (75%), Gaps = 26/253 (10%) Query: 1 MSQINDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 60 M +INDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS Sbjct: 347 MGEINDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 406 Query: 61 AAAAKEIKTLIDASVERVENGSRLVEQAGTTMDEVVASVKRVTDVVAEITAASGEQSDGI 120 A+AAKEIK LID SV RV+NGSRLVEQAGTTM EVVASV+RVTDVVAEI+AAS EQSDGI Sbjct: 407 ASAAKEIKALIDDSVSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGI 466 Query: 121 EQINQAIVQMDEVTQQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSNHET------RR 174 EQIN AI QMD+VTQQNAALVEEAAAAAQSLQEQS RL TVS+FKLS+H+T R+ Sbjct: 467 EQINHAITQMDQVTQQNAALVEEAAAAAQSLQEQSTRLSATVSVFKLSSHDTPHAAAPRK 526 Query: 175 QAPMAAAAKRTVDVTPRTAALPRK------------------PAAKASAPAKALPVAQPA 216 AP AA++ T RTA P K P A S PA + Sbjct: 527 PAPAQAASRPAAAATVRTA--PSKPAAVLASSASPASPASTTPKALPSKPAAPASAKAGS 584 Query: 217 LKPAAAEGDWEQF 229 AA +GDWEQF Sbjct: 585 KAMAADDGDWEQF 597 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 251 bits (641), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 144/197 (73%), Positives = 167/197 (84%), Gaps = 8/197 (4%) Query: 1 MSQINDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 60 M IN +SRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS Sbjct: 348 MGAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 407 Query: 61 AAAAKEIKTLIDASVERVENGSRLVEQAGTTMDEVVASVKRVTDVVAEITAASGEQSDGI 120 A+AAKEIK LI+ SV +V++GSRLVEQAG TM EVV+SV+RVTD+VAEI+AAS EQ+ GI Sbjct: 408 ASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGI 467 Query: 121 EQINQAIVQMDEVTQQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSNHETRRQAPMAA 180 EQIN AI QMD+VTQQNAALVEEAAAAA S+Q Q+GRL++ VS+F+LS E P+ Sbjct: 468 EQINLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLSERE-----PL-- 520 Query: 181 AAKRTVDVTPRTAALPR 197 +R +DVTP + LP+ Sbjct: 521 -VRREIDVTPSSPVLPQ 536 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 249 bits (635), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 155/230 (67%), Positives = 182/230 (79%), Gaps = 7/230 (3%) Query: 1 MSQINDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 60 MS IND+SRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS Sbjct: 348 MSAINDSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 407 Query: 61 AAAAKEIKTLIDASVERVENGSRLVEQAGTTMDEVVASVKRVTDVVAEITAASGEQSDGI 120 AAAA EIK LID SV +V+ GS+LV++AG TM+EVVASVKRV+D+VAEITAA EQ+ GI Sbjct: 408 AAAAHEIKALIDDSVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGI 467 Query: 121 EQINQAIVQMDEVTQQNAALVEEAAAAAQSLQEQSGRLVETVSIFKL-SNHETRRQAPMA 179 EQIN A+VQMDE TQQNAALVE+AAAAA++LQEQ+GRL ETVS+F+L + H + A Sbjct: 468 EQINNAVVQMDENTQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDAQHVPVVVSRAA 527 Query: 180 AAAKRTVDVTPRTAALPRKPAAKASAPAKALPVAQPALKPAAAEGDWEQF 229 A A+ D+TP AL + + + PA + A +A +GDWEQF Sbjct: 528 ATAQPERDITPARPALAQSRSKVMARPAHSNTSA------SAEQGDWEQF 571 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 231 bits (589), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 139/171 (81%), Positives = 151/171 (88%) Query: 1 MSQINDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 60 M IND+SRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS Sbjct: 349 MQAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 408 Query: 61 AAAAKEIKTLIDASVERVENGSRLVEQAGTTMDEVVASVKRVTDVVAEITAASGEQSDGI 120 AAAAKEIK+LID SVE+VE GS+LVEQAG TM EVV SV+RVTD+V EI AS EQS GI Sbjct: 409 AAAAKEIKSLIDDSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGI 468 Query: 121 EQINQAIVQMDEVTQQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSNHE 171 EQ+N+AI QMDEVTQQNAALVEEAAAAAQSLQ Q+ LV VSIFK+ H+ Sbjct: 469 EQVNRAITQMDEVTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQ 519 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.310 0.122 0.311 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 402,555 Number of extensions: 9556 Number of successful extensions: 291 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 246 Number of HSP's successfully gapped: 71 Length of query: 229 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 147 Effective length of database: 1,231,600 Effective search space: 181045200 Effective search space used: 181045200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)