BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0089.p (345 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 466 e-132 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 374 e-105 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 224 8e-60 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 201 9e-53 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 196 3e-51 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 466 bits (1199), Expect = e-132, Method: Compositional matrix adjust. Identities = 247/320 (77%), Positives = 275/320 (85%) Query: 1 MKITDMKISVRLGACFAALIAVMCLIAGVGVKNLWSVSDATSEIVNDRYVKVALGAQMSD 60 MKI+DMKISVRLGACFAALI VMC+IAGVGVKNL VSDAT EIVNDRYVKVALG Q++D Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 KINTAARSLRNAILARNPEEAKKYLDRVATNTKDVGEMLVRMEKLINTPRGKELIGALNQ 120 K+NT ARSLRNAI+ARNPEE KKYLDR+ T T V E L MEK NTPRG EL+ AL Q Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 SRDEYSKHRAKVVELIQQQKKDEATAYLFDQTIPAQDKYFAALKNMTEFQVSLMDKAVER 180 +R +YSK R KVV+LI QQK+DEATA+LFD+TIP QDKYFAA+K M FQ SLMDK+ ER Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 ANDASSNAVNIMLLLSAAAIVLSALCAWLITRSITRPLNQAVQVATAVAAGDLTVQIDNS 240 A+ ASS+A+NIML+LS A++LSALCA LITRSITRPLN+AVQVATAVAAGDLTVQI+ + Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 SKDETGALLASLKAMNDNLHRIVTEVRQGSDTINTASGEIATGNLDLSSRTEQQAGALEE 300 SKDETGALL +LK+MNDNLHRIV EVR G+DTINTAS EIATGNLDLSSRTEQQAGALEE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEE 301 Query: 301 TASAMEELTSTXRTPTTPAR 320 TASAMEELTST R AR Sbjct: 302 TASAMEELTSTVRQNADNAR 321 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 374 bits (960), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/320 (62%), Positives = 247/320 (77%) Query: 1 MKITDMKISVRLGACFAALIAVMCLIAGVGVKNLWSVSDATSEIVNDRYVKVALGAQMSD 60 MK+ D+KISVRL CFA LI VMCLI GVG+K+L S+S +++ IV DRY K+AL ++ D Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 KINTAARSLRNAILARNPEEAKKYLDRVATNTKDVGEMLVRMEKLINTPRGKELIGALNQ 120 +N AAR+LRNA+L RN EEA +YLDR A N+ E L +MEK+++T RG+EL ++ + Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 121 SRDEYSKHRAKVVELIQQQKKDEATAYLFDQTIPAQDKYFAALKNMTEFQVSLMDKAVER 180 +R Y+ R K+ ELI+QQKK+EA LF Q IPAQDKYF L FQ SLM+++V Sbjct: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTE 180 Query: 181 ANDASSNAVNIMLLLSAAAIVLSALCAWLITRSITRPLNQAVQVATAVAAGDLTVQIDNS 240 D + +A+ +ML LSA AI L + AWL+TRSITRPLN+AV VA+AVAAGDLTVQI + Sbjct: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGAT 240 Query: 241 SKDETGALLASLKAMNDNLHRIVTEVRQGSDTINTASGEIATGNLDLSSRTEQQAGALEE 300 SKDETGALLA+LK+MND+LHRIV+EVRQGSDTINTAS EIATGNLDLSSRTE+QAGALEE Sbjct: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEE 300 Query: 301 TASAMEELTSTXRTPTTPAR 320 TASAMEELTST + AR Sbjct: 301 TASAMEELTSTVKQNADNAR 320 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 224 bits (571), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 132/317 (41%), Positives = 190/317 (59%), Gaps = 8/317 (2%) Query: 1 MKITDMKISVRLGACFAALIAVMCLIAGVGVKNLWSVSDATSEIVNDRYVKVALGAQMSD 60 M+ ++ I+ RL F+ LI V+ I +G+ L ++ A +VNDRY K+A+ +S Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 KINTAARSLRNAILARNPE----EAKKYLDRVATNTKDVGEMLVRMEKLINTPRGKELIG 116 K++ A SLRN +L +P E K A NTK E+ +L+ P K + Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDEL----TRLVANPEAKAKLD 116 Query: 117 ALNQSRDEYSKHRAKVVELIQQQKKDEATAYLFDQTIPAQDKYFAALKNMTEFQVSLMDK 176 + ++R Y+ R ++ +L KD A + + +P Q YF+ L +++ Q LMD+ Sbjct: 117 KVTETRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQ 176 Query: 177 AVERANDASSNAVNIMLLLSAAAIVLSALCAWLITRSITRPLNQAVQVATAVAAGDLTVQ 236 +V++A A IM++ A +A AW I+RSITRPL++AV+VA VAAGDLT Sbjct: 177 SVDQAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAV 236 Query: 237 IDNSSKDETGALLASLKAMNDNLHRIVTEVRQGSDTINTASGEIATGNLDLSSRTEQQAG 296 I S DETG LL +L AMN L IV EVR+G+D++ TAS +IATGNLDLSSRTE+QA Sbjct: 237 IAAHSNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQAS 296 Query: 297 ALEETASAMEELTSTXR 313 ALEETAS++EELTS+ + Sbjct: 297 ALEETASSLEELTSSVK 313 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 201 bits (510), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 119/317 (37%), Positives = 189/317 (59%), Gaps = 1/317 (0%) Query: 5 DMKISVRLGACFAALIAVMCLIAGVGVKNLWSVSDATSEIVNDRYVKVALGAQMSDKINT 64 ++K++VRL A FA ++A++ +++ + +++ A +IVNDRY+KV + D +N Sbjct: 7 NLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVNE 66 Query: 65 AARSLRN-AILARNPEEAKKYLDRVATNTKDVGEMLVRMEKLINTPRGKELIGALNQSRD 123 + LR AI N +K ++ K E L ++ T G++ AL+++R Sbjct: 67 QIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKALDEARI 126 Query: 124 EYSKHRAKVVELIQQQKKDEATAYLFDQTIPAQDKYFAALKNMTEFQVSLMDKAVERAND 183 + +A + L++ A Y+ + Q+ Y A + + Q + + +A Sbjct: 127 AFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEGAKAVA 186 Query: 184 ASSNAVNIMLLLSAAAIVLSALCAWLITRSITRPLNQAVQVATAVAAGDLTVQIDNSSKD 243 + A+ + L S AA++ + + +L+ RSI +PL +AV+VA VAAGDLT +I+ S+D Sbjct: 187 DGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSRD 246 Query: 244 ETGALLASLKAMNDNLHRIVTEVRQGSDTINTASGEIATGNLDLSSRTEQQAGALEETAS 303 ETG L+ +L+ MNDNL IV+ VR+G+++I TASGEIA+GNLDLS+RTEQQAG+LEETAS Sbjct: 247 ETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETAS 306 Query: 304 AMEELTSTXRTPTTPAR 320 AMEE+TST R AR Sbjct: 307 AMEEMTSTVRQNADNAR 323 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 196 bits (497), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 130/325 (40%), Positives = 183/325 (56%), Gaps = 16/325 (4%) Query: 5 DMKISVRLGACFAALIAVMCLIAGVGVKNLWSVSDATSEIVNDRYVKVALGAQMSDKINT 64 ++KI VRL F AL+ +M ++ +GV L S+ DAT D ++AL + D + Sbjct: 3 NLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDAT-----DDMTRIALKKE-RDAVQW 56 Query: 65 AARSLRN-----AILARNPEEAKKYLDR-VATNTKDVGEMLVRMEKLINTPRGKELIGAL 118 A N A++ + + + Y + + + + ++ +E I K L + Sbjct: 57 HAAIKENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEV 116 Query: 119 NQSRDEYSKHRAKVVELIQQQKKDEATAYLFDQT--IPAQDKYFAALKNMTEFQVSLMDK 176 + R Y R + ++ + D+A A T + D Y + +FQ ++D+ Sbjct: 117 GKLRAAYRATRQSIFDV--KTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQ 174 Query: 177 AVERANDASSNAVNIMLLLSAAAIVLSALCAWLITRSITRPLNQAVQVATAVAAGDLTVQ 236 N + +++L L A IVL A AWL+TRSITRPLNQAV +A VAAGDLT + Sbjct: 175 TAAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSR 234 Query: 237 IDNSSKDETGALLASLKAMNDNLHRIVTEVRQGSDTINTASGEIATGNLDLSSRTEQQAG 296 ID+SS+DETG LLA+LK MN NL IV VR G++TINTAS EIATGNLDLS+RTE QAG Sbjct: 235 IDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAG 294 Query: 297 ALEETASAMEELTSTXRTPTTPARP 321 +LEETASAME+LTST + AR Sbjct: 295 SLEETASAMEQLTSTVKQNADNARQ 319 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.126 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 709,060 Number of extensions: 22805 Number of successful extensions: 288 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 241 Number of HSP's successfully gapped: 65 Length of query: 345 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 259 Effective length of database: 1,212,660 Effective search space: 314078940 Effective search space used: 314078940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)