BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0083.p
         (335 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312831|ref|YP_003776923.1| hypothetical protein Hsero_3536...   390   e-109

>gi|300312831|ref|YP_003776923.1| hypothetical protein Hsero_3536
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  390 bits (1001), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/276 (69%), Positives = 226/276 (81%)

Query: 57  ARLARQIKLRARGLLAPRQTRQWLDFWNLTATHAALAVATPRLLHKIYRPYQSLRLRRPQ 116
           +RLARQ+KL +R LL P  TR+WLDFWNL+ATH ALAVA PRLL K+YRPYQSL+L R +
Sbjct: 46  SRLARQVKLASRYLLHPALTRRWLDFWNLSATHRALAVAAPRLLDKVYRPYQSLQLSRAE 105

Query: 117 RLEILTSHYDFVIRRGLAPLVLQASQQQIPIGQFQGKSGQDYEVRLAAINSLDHEGELAL 176
           RL +LTSHYDF+IR+GLAPLVL+A++Q +P+  F GKSG  YEVRLAAI+SL  EGELAL
Sbjct: 106 RLALLTSHYDFIIRKGLAPLVLRAARQAVPVACFAGKSGDRYEVRLAAIDSLTLEGELAL 165

Query: 177 HLYRGQDHLFSTAFTLCRQGSGWIVRIGCLQGSGGADSREQIRRATRDLFGLRPKALMIR 236
           HLY G  HLFSTAF++C Q +GW +R+GCLQG  G  +RE++R ATRDLFGLRPKALMIR
Sbjct: 166 HLYHGDQHLFSTAFSVCAQENGWELRVGCLQGPRGQQTRERVRHATRDLFGLRPKALMIR 225

Query: 237 MVRAIGAGHGCSRVLLVSNGNRVAGRRGKGGRVHADYDAFWQELGAARRSDGDYELPCEE 296
           +VRA+G  HGC+RV+LVSN +RVA    +   VHADYDAFWQELGAARRSDGDYELPC+E
Sbjct: 226 LVRALGVAHGCARVVLVSNAHRVARHHCRREHVHADYDAFWQELGAARRSDGDYELPCDE 285

Query: 297 TAPDLQSLPSRKRAEARQRLALTQAVTQQVRGALVR 332
              D+ +LPSRKRAEARQRLALTQ     +R ALVR
Sbjct: 286 AVSDINALPSRKRAEARQRLALTQQAALAMRCALVR 321


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,036,830
Number of extensions: 41799
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,212,660
Effective search space: 301952340
Effective search space used: 301952340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)