BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0082.p (684 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312832|ref|YP_003776924.1| flagellar capping protein [Herb... 1004 0.0 gi|300310454|ref|YP_003774546.1| flagellar hook-associated prote... 779 0.0 gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 pro... 732 0.0 >gi|300312832|ref|YP_003776924.1| flagellar capping protein [Herbaspirillum seropedicae SmR1] Length = 680 Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/683 (77%), Positives = 592/683 (86%), Gaps = 4/683 (0%) Query: 1 MATSTGSISTSAGPLDVANLVNQLVAVESKSRLTPLASKADGFNALLAAYGSLDKALGTY 60 MATSTGSISTSAGPLDVANLVNQLV+VESKSRLTPLASKAD FNAL++AYG L AL TY Sbjct: 1 MATSTGSISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTY 60 Query: 61 QSALAGLTATRFSAQKAAVSNSGNATGSGGEVKTGADAISADINADDSTRALAQKIRSGG 120 Q+ALA LTA +FSAQKAAVSN+G ++ + K+G DA+SADIN+D ST+A AQ I+S G Sbjct: 61 QNALAELTAAKFSAQKAAVSNTGRSS----DGKSGNDAVSADINSDASTKAQAQIIKSAG 116 Query: 121 FASGHLFRAGDSLAIKVGTRPPAFITLKADATVTGLRDTINAANAGVTASVTRDEAGEHL 180 FASGHLF+AGDS+AIKVG P FITLKADAT+ GLRDTINAA AGVTASV RD+AG+HL Sbjct: 117 FASGHLFKAGDSVAIKVGEASPHFITLKADATINGLRDTINAARAGVTASVVRDDAGDHL 176 Query: 181 VLESNTGGTANTLSIRSNNSLSAISFDPQQQRPGAMTQIQAARDATRAAAGSYALSVEQL 240 VLESNT GTAN L +R+NNSLSAISFD QQ RPGAMTQ QAARDAT AA GSYA+SVEQL Sbjct: 177 VLESNTAGTANLLKVRANNSLSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAISVEQL 236 Query: 241 AQAHKLSSAGINPGTTFDVGVLAIKTGQGSTALIKPANHTLAGVRDAINAAEAGVNASIV 300 AQ+HKLSSAGI PG+TFD+GVLAIK G GST LIKPA++TLAGVRDAINAA AGVNASIV Sbjct: 237 AQSHKLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGVNASIV 296 Query: 301 SDGKQEHLVLTAKESGAQNAIRVSGTGDFAVFASDPSGNVSTASVALEKRFGTGTVSLTV 360 SDGKQEHLVLTAKESGA NA+R+SGTGDFAVF+SDPSGN STASV EKRF G V+L+V Sbjct: 297 SDGKQEHLVLTAKESGANNALRISGTGDFAVFSSDPSGNASTASVTPEKRFSQGAVNLSV 356 Query: 361 GTRNFSLSPASSTAGAAPGLADVASAINEAKAGVTATVRREGQGDQAVERLVLSNGGSDA 420 G R SL PAS+TAGAAPGLADVA AINEAKAGV+ATV+REGQGD+AVERLVLS GSD Sbjct: 357 GARTISLKPASATAGAAPGLADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSDP 416 Query: 421 IRLRGSGDYAMLTASAMGQLQRPQDARLSIDGVAITAPGNQIRDAISGVTLNLNKTTRSG 480 + LRGSGDYA+L ASAMGQLQ+PQDARLSIDGVAITA N I+DAISGVTLNLNKTT + Sbjct: 417 VSLRGSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSAT 476 Query: 481 DRFTLTVSNDNSGAKEAVNSFVNAFNALTKSVATLTRQVPSKVRGQAGEQGPLASETMVQ 540 D+ TL +SND+SG AVNSFVNAFN L K++A +TRQ P+KVRGQAGEQG LA E+MV+ Sbjct: 477 DKLTLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGLLAGESMVR 536 Query: 541 ALMGQLRNAVLGAVSGNEHGSLAAIGVSFKKDGTLALDDARLGKAGNTSFDALARLFTDK 600 AL G+LRNAVL ++ GN GSL AIGV FKKDGTL LD ARL KAG +F+A+A+LF K Sbjct: 537 ALTGELRNAVLASMPGNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAGK 596 Query: 601 GGVVTRSQALLDKVLGETGLLAGKTRGLQTSLKTVSDQQAAARERLANLRDSYTNQFNRL 660 G+V R+++LLDKVLGE GLLAGKTRGLQ SLK VSDQQAAAR RLANLRDSYTNQFNRL Sbjct: 597 EGLVARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRL 656 Query: 661 NLTLARMQASQSYLTQQLARLRK 683 N+TL++MQASQ+YLTQQLARLR+ Sbjct: 657 NVTLSKMQASQNYLTQQLARLRR 679 >gi|300310454|ref|YP_003774546.1| flagellar hook-associated protein 2 [Herbaspirillum seropedicae SmR1] Length = 676 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/685 (57%), Positives = 517/685 (75%), Gaps = 11/685 (1%) Query: 1 MATSTGSISTSAGPLDVANLVNQLVAVESKSRLTPLASKADGFNALLAAYGSLDKALGTY 60 MATSTG+ISTSAGPLDVA LVNQL++VESKSRLTPL +K FN L++AYGSL A +Y Sbjct: 1 MATSTGTISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSY 60 Query: 61 QSALAGLTATRFSAQKAAVSNSGNATGSGGEVKTGADAISADINADDSTRALAQKIRSGG 120 QSAL LTA FSAQK +SN+G +G + T D +AD N D+ST+ LAQK++S G Sbjct: 61 QSALKTLTAASFSAQKTTLSNAG----TGTNLTT--DPFTADTNTDESTKVLAQKLQSAG 114 Query: 121 FASGHLFRAGDSLAIKVGTRPPAFITLKADATVTGLRDTINAANAGVTASVTRDEAGEHL 180 F +G F AGDS+AIKVGT P FITL+A+AT+ G+RD INAA AGVTAS+T D +G+HL Sbjct: 115 FTAGQTFNAGDSVAIKVGTNQPTFITLQANATLAGVRDAINAAKAGVTASITTDGSGDHL 174 Query: 181 VLESNTGGTANTLSIRSNNSLSAISFDPQQQRPGAMTQIQAARDATRAAAGSYALSVEQL 240 VLESNTGGTANT+ I +NNSLS++++DP +TQIQA RDA++AAAG Y ++V QL Sbjct: 175 VLESNTGGTANTIKITANNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQL 234 Query: 241 AQAHKLSSAGINPGTTFDVGVLAIKTGQGSTALIKPANHTLAGVRDAINAAEAGVNASIV 300 AQA K+SSAGI PG+TFD GVLAIKTG GSTA+I+P ++LAGVRDAINA++AGVNASIV Sbjct: 235 AQAVKVSSAGIAPGSTFDNGVLAIKTGNGSTAIIQPKTNSLAGVRDAINASDAGVNASIV 294 Query: 301 SDGKQEHLVLTAKESGAQNAIRVSGTGDFAVFASDPSGNVSTASVALEKRFGTGTVSLTV 360 +DG +HLVLTAK++G+ N +RV+GTG+FA F DPSG ++T VA + + +G+++L V Sbjct: 295 NDGTNDHLVLTAKDAGSANTLRVTGTGNFAAFNFDPSGTITTTGVATNQTYSSGSLALQV 354 Query: 361 GTRNFSLSPASSTAGAAPGLADVASAINEAKAGVTATVRREGQGDQAVERLVLSNGGSDA 420 G+++F+++P A GL DV AIN+A GVTA++ +G D LVL+ G+DA Sbjct: 355 GSKSFTINPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKD----HLVLTPSGTDA 410 Query: 421 IRLRGSGDYAMLTASAMGQLQRPQDARLSIDGVAITAPGNQIRDAISGVTLNLNKTTRSG 480 ++L G+GDY+ L S+MGQL + QDA+L++DGV +T+ N++ + ISGVTLNL+K T S Sbjct: 411 VKLTGAGDYSDLAGSSMGQLAKAQDAKLTVDGVTVTSTSNKVTNVISGVTLNLSKVTTSA 470 Query: 481 DRFTLTVSNDNSGAKEAVNSFVNAFNALTKSVATLTRQVPSKVRGQAGEQGPLASETMVQ 540 D F+L+++ND SG A N+FV A+N L K+VA LT+Q PS +GQA PLASE+ V Sbjct: 471 DNFSLSINNDTSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVL 530 Query: 541 ALMGQLRNAVLGAVSGNEHGSLAAIGVSFKKDGTLALDDARLGKAGNTSFDALARLFTD- 599 ALMGQ+RN +LGA+ N +L+ IG+SF+KDGTLALD +L A N FD + +LFT Sbjct: 531 ALMGQVRNTMLGALGDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLFTSA 590 Query: 600 KGGVVTRSQALLDKVLGETGLLAGKTRGLQTSLKTVSDQQAAARERLANLRDSYTNQFNR 659 GVV + Q L+D +LGE+G+LA KT+GLQ SLK V+DQQ AA RL +L+D+YTNQFNR Sbjct: 591 TNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQFNR 650 Query: 660 LNLTLARMQASQSYLTQQLARLRKT 684 LN+TLA MQ+ QSYLTQQLA+L K+ Sbjct: 651 LNVTLATMQSRQSYLTQQLAKLSKS 675 >gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 protein [Herbaspirillum seropedicae SmR1] Length = 690 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/699 (54%), Positives = 501/699 (71%), Gaps = 26/699 (3%) Query: 1 MATSTGSISTSAGPLDVANLVNQLVAVESKSRLTPLASKADGFNALLAAYGSLDKALGTY 60 MATSTG+ISTSAGPLDVA LV+QL++ ES+S+LTPL ++A +N L++AYGSL A+ TY Sbjct: 1 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY 60 Query: 61 QSALAGLTATRFSAQKAAVSNSGNATGSGGEVKTGADAISADINADDSTRALAQKIRSGG 120 QSA+ +T+ FSAQK++VSN+G +G + T D SADIN DDST+ LAQKI+S G Sbjct: 61 QSAIKAMTSASFSAQKSSVSNAG----TGSNLTT--DPFSADINGDDSTKILAQKIQSAG 114 Query: 121 FASGHLFRAGDSLAIKVGTRPPAFITLKADATVTGLRDTINAANAGVTASVTRDEAGEHL 180 +SG F AGDS+AIK+GT P F+TL+A++T+ G+RD INA G TAS+ D AG+HL Sbjct: 115 ISSGTTFNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHL 174 Query: 181 VLESNTGGTANTLSIRSNNSLSAISFDPQQQRPGAMTQIQAARDATRAAAGSYALSVEQL 240 VLESNTGGTANT+ + +NNSLS +DP P MTQ QA RDAT+AA+G+YA++V QL Sbjct: 175 VLESNTGGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQL 234 Query: 241 AQAHKLSSAGINPGTTFDVGVLAIKTGQGSTALIKPANHTLAGVRDAINAAEAGVNASIV 300 AQA KLSSA I PG+TFD G+LAIKTG GST +IKP +TLAGVRDAIN+++AGVNA+IV Sbjct: 235 AQAEKLSSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIV 294 Query: 301 SDGKQEHLVLTAKESGAQNAIRVSGTGDFAVFASDPSGNVSTASVALEKRFGTGTVSLTV 360 SDG +HLV+TAK SG+ N I+++GT +FAVF SDPSG V++ +VA + + G ++L V Sbjct: 295 SDGTNDHLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKV 354 Query: 361 GTRNFSLSPASSTAGAAPGLADVASAINEAKAGVTATVRREGQGDQAVERLVLSNGGSD- 419 G +F+++P ++ +G L V AIN A AGVTA++ +G D LVL+ GS Sbjct: 355 GDSSFNIAPVANGSGNI-DLTQVKLAINNANAGVTASITNDGSND----HLVLTPTGSSA 409 Query: 420 --AIRLRGSGDYAMLTASAMGQLQRPQDARLSIDGVAITAPGNQIRDAISGVTLNLNKTT 477 A+ L G+ DYA L+ S MGQL + QDA+LSIDGV +T+P N++ + ISGVTLNL+K T Sbjct: 410 TAAVSLTGTSDYAGLSMSGMGQLLKAQDAKLSIDGVNVTSPTNKVENVISGVTLNLSKVT 469 Query: 478 RSGDRFTLTVSNDNSGAKEAVNSFVNAFNALTKSVATLTRQVPSKVRGQAGEQGPLASET 537 S D FTL +SND SG A NSFV A+N L K+VA +T Q PS GQA PLASE+ Sbjct: 470 TSADNFTLNISNDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASES 529 Query: 538 MVQALMGQLRNAVLGAVS-GNEHGSLAAIGVSFKKDGTLALDDARLGKAGNTSFDALARL 596 VQ +M QLRN + V GN +L+ IG+SF+KDGTLALD +L A +F +A L Sbjct: 530 SVQTIMSQLRNTLFSTVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANL 589 Query: 597 F--TD---------KGGVVTRSQALLDKVLGETGLLAGKTRGLQTSLKTVSDQQAAARER 645 F TD K G+VT+ Q L+ +L + G++A KT GLQ SLK D+Q A + R Sbjct: 590 FAGTDPDPTNTTSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSR 649 Query: 646 LANLRDSYTNQFNRLNLTLARMQASQSYLTQQLARLRKT 684 L+NL+D+YTNQFN+LNLTL+ MQ++QSYLTQQLA L K+ Sbjct: 650 LSNLKDAYTNQFNQLNLTLSSMQSTQSYLTQQLANLAKS 688 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.311 0.125 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,834,422 Number of extensions: 74240 Number of successful extensions: 330 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 295 Number of HSP's successfully gapped: 3 Length of query: 684 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 592 Effective length of database: 1,184,250 Effective search space: 701076000 Effective search space used: 701076000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 134 (56.2 bits)