BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0080.p
         (241 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312834|ref|YP_003776926.1| hypothetical protein Hsero_3539...   275   3e-75

>gi|300312834|ref|YP_003776926.1| hypothetical protein Hsero_3539
           [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score =  275 bits (702), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 167/206 (81%)

Query: 18  LTLPVAPALRGMIDAALNAVMEEAAAEARLTMGTLGRCADYALVGARVLRLLLNRPYTAL 77
           L++PVAPA+R +ID ALN VME+AAAEA L+ GTLGRCADYALVGARVL +LL+ PY A+
Sbjct: 23  LSVPVAPAMRDLIDTALNTVMEQAAAEAGLSRGTLGRCADYALVGARVLSVLLDHPYEAV 82

Query: 78  SGGEVIDCGSGLYVAMHPGRKARRSARKLSELKDYHCWIEALHPMPDGSLRREIIDFTMR 137
           SGGE+IDCG GLYV + PGR+ARR AR+LSEL+DYHCWIEA +P+PDGS RRE IDFTMR
Sbjct: 83  SGGEIIDCGGGLYVVLQPGREARRRARRLSELRDYHCWIEAWYPLPDGSRRRETIDFTMR 142

Query: 138 HDPLVAEVCGLPFTRSHRHDYLWAWQEEIAPLPLAARAQLPPQSRSGDWMWVDQDCLRLL 197
           HD LVAEV  LP+TR+    YLW WQ++IAP+P  ARA L    R+G WMW D+DC RLL
Sbjct: 143 HDRLVAEVFSLPYTRAQPPSYLWEWQDQIAPVPQEARAHLSANGRNGAWMWADKDCQRLL 202

Query: 198 KKYEQDHEGLLARLTGQVLHKLVEAM 223
           KKY+ DH+ LL RL GQVLH L++ +
Sbjct: 203 KKYDADHQALLDRLAGQVLHALMQVL 228


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 573,777
Number of extensions: 19282
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,226,865
Effective search space: 193844670
Effective search space used: 193844670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)