BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0079.p
         (379 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313661|ref|YP_003777753.1| glycine/D-amino acid oxidase [H...   657   0.0  

>gi|300313661|ref|YP_003777753.1| glycine/D-amino acid oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/377 (86%), Positives = 346/377 (91%), Gaps = 2/377 (0%)

Query: 1   MSQQGRVDYLIIGAGIAGASIAYWLARHGSVLLLERESQPGYHSTGRSAALYMESYGPPQ 60
           MS Q RVDYLIIGAGIAGASIAYWLARHGSVLL+ERESQPGYHSTGRSAALYMESYGPPQ
Sbjct: 1   MSDQARVDYLIIGAGIAGASIAYWLARHGSVLLVERESQPGYHSTGRSAALYMESYGPPQ 60

Query: 61  VRALTCASRAFFDHPPEGFTEHALLTPRGALFYATSALRDELDAHEALVRSVSDKVQRLD 120
           VRALTCASRAFFDHPPEGF EH LLTPRGALF+A SA R +LD HEALVRSVSDKVQRLD
Sbjct: 61  VRALTCASRAFFDHPPEGFAEHPLLTPRGALFFANSAQRAQLDEHEALVRSVSDKVQRLD 120

Query: 121 AEQTRAMVPVLREQDLIGSVYEEDASDIDVHALHQGFLRGARAAGARVLCNAEVQSLQHG 180
           A+QTRAMVPVLR++DLIG+VYEEDASDIDVHALHQGFLRGARAAGARVLC+AEVQ++   
Sbjct: 121 AQQTRAMVPVLRDEDLIGAVYEEDASDIDVHALHQGFLRGARAAGARVLCHAEVQAITR- 179

Query: 181 HEQGESTWHVQTSQGELRAGVIVNAAGAWADEIGQLAGAAPIGLVPKRRSAFTFAAPADS 240
            ++   TW V TSQGEL  GVIVNAAGAWADEIG+LAGAAPIGL PKRRSAFTFAAPA S
Sbjct: 180 -DEDSQTWRVHTSQGELLGGVIVNAAGAWADEIGRLAGAAPIGLQPKRRSAFTFAAPAGS 238

Query: 241 AHWPMFMPVDESFYIKPDAGLLLGSPANADPVGAHDVQAEELDIAIAIDHIQNGTTLEIR 300
            HWPMFMPVDESFYIKPDAGLLLGSPANADPV   DVQAEELDIAIAIDHIQN TTLEIR
Sbjct: 239 EHWPMFMPVDESFYIKPDAGLLLGSPANADPVPPQDVQAEELDIAIAIDHIQNATTLEIR 298

Query: 301 RPAHVWAGLRSFVSDGSFVGGYDAKVPDFFWAAGQGGYGIQSSPAAGEAYAALIRGEPVP 360
           RPAHVWAGLRSFV+DGSFVGGYD ++P FFWAAGQGGYGIQS+PAAGE YAAL+RGEPVP
Sbjct: 299 RPAHVWAGLRSFVADGSFVGGYDRELPGFFWAAGQGGYGIQSAPAAGETYAALVRGEPVP 358

Query: 361 AHIARFGVDAAALSPAR 377
           AHIARFGV+A ALSP R
Sbjct: 359 AHIARFGVEAGALSPGR 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,308,298
Number of extensions: 60003
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,207,925
Effective search space: 352714100
Effective search space used: 352714100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)