BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0078.p
         (116 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313660|ref|YP_003777752.1| endoribonuclease L-PSP protein ...   192   4e-51
gi|300311291|ref|YP_003775383.1| endoribonuclease L-PSP protein ...    90   5e-20

>gi|300313660|ref|YP_003777752.1| endoribonuclease L-PSP protein
           [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score =  192 bits (489), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 92/107 (85%), Positives = 100/107 (93%)

Query: 1   MSTIQRFNTNARMSQLVLANNFAFVAGQVADHPGAPIPQQASEVLAKVDAQLQAQGIARE 60
           M+ I+RFNTNARMSQLV+AN FAFV+GQV DH GAPI QQA+EVLAK+DAQLQAQGI RE
Sbjct: 1   MNKIERFNTNARMSQLVIANGFAFVSGQVPDHAGAPIAQQAAEVLAKIDAQLQAQGIGRE 60

Query: 61  RIVSANVWLSSPEHFAAFNAVWDAWVPAGHAPTRACVQALLMAPGLD 107
           RIVSANVWLSSPEHFAAFNAVW+AW+PAGHAPTRACVQALLM PGLD
Sbjct: 61  RIVSANVWLSSPEHFAAFNAVWEAWLPAGHAPTRACVQALLMLPGLD 107


>gi|300311291|ref|YP_003775383.1| endoribonuclease L-PSP protein
           [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score = 89.7 bits (221), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 67/113 (59%)

Query: 3   TIQRFNTNARMSQLVLANNFAFVAGQVADHPGAPIPQQASEVLAKVDAQLQAQGIARERI 62
           ++QR +   R+S++ + N   ++AGQ+A+     I  Q  EVL  +D  L   G  + +I
Sbjct: 2   SVQRLHVGNRLSEVAIHNGTVYLAGQIAEDTTQNIEGQTREVLGHIDRLLAEAGSDKSKI 61

Query: 63  VSANVWLSSPEHFAAFNAVWDAWVPAGHAPTRACVQALLMAPGLDVEVAVIAA 115
           +S  ++LS  + FA  NAVWD WV  G+AP RA V+A L  P L VE+ ++AA
Sbjct: 62  LSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAA 114


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.129    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 381,974
Number of extensions: 14177
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 116
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,274,215
Effective search space: 54791245
Effective search space used: 54791245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)