BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0073.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310692|ref|YP_003774784.1| transcription regulator protein...   241   4e-65
gi|300309821|ref|YP_003773913.1| transcription regulator protein...    59   2e-10

>gi|300310692|ref|YP_003774784.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score =  241 bits (614), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 134/196 (68%), Positives = 162/196 (82%)

Query: 4   RADKTRAILLDAALAAFARRGVRATTLEHVAASAAFTRGAVYWHFPDKLSLVNAVFDDLV 63
           RAD+TRA+LLDAALAAFARRGVRATTLEHVAASAA TRGAVYWHFPDK +LV AVF+++ 
Sbjct: 3   RADQTRALLLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEEMR 62

Query: 64  WPFDIGPELAVYRQSEQPLLLLREVLWLKLLDFLRNVQQRRRMEVVLRYRGTPELPEELG 123
           WPF++G +L+ Y   + PL LLREVLWL++   + +++QRRRME+VLRYRGTPELPEEL 
Sbjct: 63  WPFELGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEELS 122

Query: 124 ERIESLSLRALQHLTAALNIAYERGQLRRGLTPIDVARCLVAACMGVIAEHMEDPQARLE 183
            R+E++ LRA+  LTA +NIAYERG LRRGLTPIDVAR +VAA +GVIAE+M+D QA  E
Sbjct: 123 LRLETMILRAVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVIAENMDDAQAAPE 182

Query: 184 HSFHLAPLLVLQGAEV 199
             F+L P LVL GA  
Sbjct: 183 GYFYLTPGLVLVGAST 198


>gi|300309821|ref|YP_003773913.1| transcription regulator protein
          [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score = 59.3 bits (142), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 44/76 (57%)

Query: 7  KTRAILLDAALAAFARRGVRATTLEHVAASAAFTRGAVYWHFPDKLSLVNAVFDDLVWPF 66
          +TR+ +LDAA   F  RGV  T+L  VA +A  TRGA+YWHF +K  L +A+ + +  P 
Sbjct: 11 ETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFDAMCERVRLPM 70

Query: 67 DIGPELAVYRQSEQPL 82
          +   E     Q E PL
Sbjct: 71 EAVLEENASPQVEDPL 86


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 507,166
Number of extensions: 17611
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)