BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0068.p (373 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310663|ref|YP_003774755.1| outer membrane porin, OmpC fami... 262 3e-71 gi|300313057|ref|YP_003777149.1| porin signal peptide protein [H... 221 9e-59 gi|300311557|ref|YP_003775649.1| outer membrane porin [Herbaspir... 142 5e-35 gi|300313580|ref|YP_003777672.1| outer membrane porin [Herbaspir... 119 4e-28 gi|300310328|ref|YP_003774420.1| porin signal peptide protein [H... 116 2e-27 >gi|300310663|ref|YP_003774755.1| outer membrane porin, OmpC family protein [Herbaspirillum seropedicae SmR1] Length = 346 Score = 262 bits (669), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 156/363 (42%), Positives = 216/363 (59%), Gaps = 27/363 (7%) Query: 12 AALLLAAAPVAFAQSSVTIYGVVDVYTAYQKSTVGGKDTSLWAMGNNGQMTSRLGFKGVE 71 A+LL A A AQS+VT+YGV+D Y Y +T G S+ ++ + G SR+GFKG E Sbjct: 10 ASLLCAGG--ALAQSNVTLYGVIDTYMGYTNATGKG---SVASLDSGGYQASRVGFKGSE 64 Query: 72 DLGGGYRASFNLETGFDPSTGGLQNSYRYFDRQSWVGLGGGFGEVRVGRQNSVMFLYSGN 131 DLGGG RA+F +E GF +G + +S R F+RQSWVGLG GE+R+GRQNS FL Sbjct: 65 DLGGGLRANFQMENGFASDSGAMHDSTRLFNRQSWVGLGNELGELRLGRQNSPGFLMIAR 124 Query: 132 MDAFGAATYGSAYNNFANWLARVDNDISYISPRFANTTLELHYSVGERAGSTAGNAVYQI 191 +DAF ATY S NN + + R DN I Y+SP ++ +Y +GE+ G + + Sbjct: 125 LDAFAGATYASFLNNVSAYTPRYDNVIGYLSPVMRGFRVQAYYGLGEQTAPRNGLSTAML 184 Query: 192 GMQTQQGPVYVGSAYLNANNSTNTN-SVKQFMLGGNVDYGSGKVYLAFFRTNEVISATTG 250 + + GP+Y+G + +A NS N N +++ GG DYGSGKV+L ++R N + +A + Sbjct: 185 AGEYESGPLYLGVSS-SAQNSANDNITIRSTFAGGAYDYGSGKVFLGYYRGNNLGAAAS- 242 Query: 251 NVFTNPAGKYDPAGAVVGNTAGDYHNTYSLSADYRINAQTTVGAGGGYVKDSSRYNNNAR 310 NT G Y++ YSLSA+YR+ Q T+GAG G+ KDS+ NAR Sbjct: 243 -----------------ANTPGSYYSAYSLSANYRLTGQATLGAGYGWAKDSTGAGRNAR 285 Query: 311 QFSLIVNYDLSKRTRLYAVASRLINQNTAAYRMTGASFTASQALSPDAGASETGVQLGIR 370 QFSLI YDLS+RT LYA + L N N A++ + GA+ A P +G + GVQ+GIR Sbjct: 286 QFSLIGTYDLSRRTMLYATYAHLANNNGASFSLAGAAPITKNA--PVSGGTVNGVQVGIR 343 Query: 371 HTF 373 H F Sbjct: 344 HLF 346 >gi|300313057|ref|YP_003777149.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 221 bits (562), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 154/387 (39%), Positives = 207/387 (53%), Gaps = 23/387 (5%) Query: 3 LQHPIRLIPAA--LLLAAAPVAFAQSS--VTIYGVVDVYTAYQKSTVGGKDTSLWAMGNN 58 + P P A LLLAA+ A AQS+ VT+YG +D Y Y +S+ G SLWA+ + Sbjct: 1 MTKPSIRTPVAMGLLLAASGSALAQSASNVTLYGTLDQYLGYMRSSSG---KSLWALNDG 57 Query: 59 GQMTSRLGFKGVEDLGGGYRASFNLETGFDPSTGGLQNSYRYFDRQSWVGLG-GGFGEVR 117 + SR+G KG EDLGGGY +F LE GF TG + R FDRQSWVG+ GE R Sbjct: 58 AILRSRIGLKGYEDLGGGYATTFTLENGFSADTGAQADGTRLFDRQSWVGIKTPAAGEFR 117 Query: 118 VGRQNSVMFLYSGNMDAFGAATYGSAYNNFANWLARVDNDISYISPRFANTTLELHYSVG 177 +GRQNSV F G +D TYGS N F +R DND+S+ SPR+A ++LHY++ Sbjct: 118 IGRQNSVPFFIGGAIDYTERTTYGSIINTFGV-PSRFDNDLSWKSPRWAGLQIDLHYAMP 176 Query: 178 ERAGSTAG-NAVYQIGMQTQQGPVYVGSAYLNANNSTN---TNSVKQFMLGGNVDYGSGK 233 E AG G VYQ+G+ GP G A L A + N+V+ + N DYG GK Sbjct: 177 ETAGEGLGRRGVYQLGIDYINGPYRAGYAGLMAKPNAGGLYDNAVQYHNVYLNYDYGPGK 236 Query: 234 VYLAFFRT----NEVISATTGNVFTNPAGKYDPAGAVVGNTAG--DYHNTYSLSADYRIN 287 VYLA+ R+ + N + +P GN A ++N Y +SADYR+ Sbjct: 237 VYLAYVRSNNTTANTNGNNAATILNNVS---NPNNFFAGNDANVQRFYNVYQISADYRLT 293 Query: 288 AQTTVGAGGGYVKDSSRYNNNARQFSLIVNYDLSKRTRLYAVASRLINQNTAAYRMTGAS 347 Q +GA G + D+S A+ ++ YDLSKRT LY A+ + NQ A +R +G++ Sbjct: 294 PQLRIGALYGVMVDTSHKEGGAQGGNVGAYYDLSKRTTLYGFANYMKNQANAGWRFSGSA 353 Query: 348 FTASQALSPDA-GASETGVQLGIRHTF 373 S D G S G+Q+GI H F Sbjct: 354 GPGSNLAGADINGKSLVGLQMGILHRF 380 >gi|300311557|ref|YP_003775649.1| outer membrane porin [Herbaspirillum seropedicae SmR1] Length = 374 Score = 142 bits (357), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 182/372 (48%), Gaps = 36/372 (9%) Query: 22 AFAQSSVTIYGVVDVYTAYQKSTVGGKDTSLWAMGNNGQMTSRLGFKGVEDLGGGYRASF 81 AFAQS+VTIYG+VD Y S + S M N SR+GFKG EDLGGG +A F Sbjct: 19 AFAQSNVTIYGIVDTSIHYL-SNANAQGNSNVRMDNGAIANSRIGFKGTEDLGGGLKAMF 77 Query: 82 NLETGFDPSTGGLQNSYRYFDRQSWVGLGGGFGEVRVGRQNSVMF-LYSGNMDAFGAATY 140 LE GF TG +Q F RQSWVGL GGFG+VRVGRQN+ +F L + + D Y Sbjct: 78 QLENGFSSDTGAMQQGGSLFGRQSWVGLQGGFGKVRVGRQNTPLFDLLADHFDPLTVGNY 137 Query: 141 GS-AYNNFANWLARVDNDISYISPRFANTTLELHYSVGERAGSTAGNAVYQIGMQTQQGP 199 S ++ A L R N + Y F ++ GE+AGS + + ++ GP Sbjct: 138 ASNSWLPAAASLVRSPNMLRY-DGDFGPVAASASWAFGEKAGSVRTGSQFSSALRYTAGP 196 Query: 200 VYVGSAYLNANNSTNTNSVKQ--FMLGGNVDYGSGKVYLAFFRTNEVISATTGNVFT--- 254 + +G Y +STN+ S+K + L + D+G KV+ + + S TG+V Sbjct: 197 LALGGGYQQTVSSTNS-SLKHTTWNLSASYDFGVAKVFGGWLNIKD-DSGLTGSVMAADG 254 Query: 255 NPAGKYDPAGAVVGNTAG--DYHNTYSLSADYR-INAQTTVGAGGGYVKDSSRYNN---- 307 + + + AGA + G N + L + Y+ NA T GA + D S+ + Sbjct: 255 DVSNGWTTAGAANNGSTGVKRKDNGFFLGSSYKATNALTLTGA---FYYDRSKNVSYVST 311 Query: 308 ----NARQFSLI--VNYDLSKRTRLYAVASRLINQNTAAYRMTGASFTASQALSPDAGAS 361 + ++++L+ +Y LSKRT+LY ++ A Y +T S + S Sbjct: 312 GNVGDGKRYTLVGWADYALSKRTQLYTTIDYNKAKDAAVYELTN---------SANGKNS 362 Query: 362 ETGVQLGIRHTF 373 T V +GIRH F Sbjct: 363 LTTVGVGIRHIF 374 >gi|300313580|ref|YP_003777672.1| outer membrane porin [Herbaspirillum seropedicae SmR1] Length = 387 Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 132/413 (31%), Positives = 180/413 (43%), Gaps = 78/413 (18%) Query: 9 LIPAALLLAAAPVAFAQSSVTIYGVVDVYTAYQKSTVGGKDT-------SLWAMGNNGQM 61 L+ A+L A A A AQSSVTIYG+VD AY S VG D S + + + Sbjct: 5 LLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYS-SKVGYTDANGNAATGSKFGINSGVIQ 63 Query: 62 TSRLGFKGVEDLGGGYRASFNLETGFDPSTGGLQ-----NSYRYFDRQSWVGLGGGFGEV 116 SR+GFKGVEDLGGG A FNLETGF GGLQ S F R+S VGL GGFG V Sbjct: 64 GSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGGFGTV 123 Query: 117 RVGRQNSVMFLYSGNMDAFGA-ATYGSAYNNFANWL-----ARVDNDISYISPRFANTTL 170 +GRQ ++ + A+ A A +G N + L R +N +SY + + T Sbjct: 124 LLGRQTD----FADTISAYTAVADFGGVVANSGSSLNRLQGTRTNNSVSYTTANLSGFTG 179 Query: 171 ELHYSVGERAGSTAGNAVYQIGMQTQQGPVYVGSAYLNAN-NSTNTNS------------ 217 L Y GE+AG T+ Y IG + GP+ +G Y + ST +++ Sbjct: 180 NLIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATNAN 239 Query: 218 ----------VKQFMLGGNVDYGSGKVYLAFFRTNEVISATTGNVFTNPAGKYDPAGAVV 267 +K + + +G +VY + R + + T P A Sbjct: 240 TALGVAGNTALKSLNVVASYQFGPARVYANYSRVKQDLKGT-------------PTVATA 286 Query: 268 GNTAGDYHNTYSLSADYRINAQTTVGAGGGYVKDSSRYNNNA-------RQFSLIVNYDL 320 +TY + Y ++ + A D SR N Q SL +Y L Sbjct: 287 TLANAQKADTYEIGTAYSLSPSLKLLA----AVDHSRATFNGVNTKGKLTQISLGADYFL 342 Query: 321 SKRTRLYAVASRLINQNTAAYRMTGASFTASQALSPDAGASETGVQLGIRHTF 373 SKRT LYA S + + +TG + T S AS+T + GIRH F Sbjct: 343 SKRTDLYAFVSNMRASDIQNPGVTGGA-TGSD-------ASQTAIITGIRHKF 387 >gi|300310328|ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 405 Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 123/408 (30%), Positives = 173/408 (42%), Gaps = 50/408 (12%) Query: 9 LIPAALLLAAAPVAFAQSS-VTIYGVVDVYTAY-QKSTVGGKDT-SLWAMGNNGQMTSRL 65 L+ A+L A A A AQSS +TIYG +D Y K GK+T SL A+ + SRL Sbjct: 5 LLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIATDGKNTGSLTAVESGLVKGSRL 64 Query: 66 GFKGVEDLGGGYRASFNLETGFDPSTGGLQNSYRYFDRQSWVGLGGGFGEVRVGRQNSVM 125 G KG EDLGGG +A F LE GF+ TG + RQ+ VGL G FG V VGRQN + Sbjct: 65 GIKGSEDLGGGLKAVFTLENGFNVDTGEAGQGKLMWGRQTTVGLSGNFGTVLVGRQNDPL 124 Query: 126 FLYSGNMDAFGAATYGSAYNNFANWL--ARVDNDISYISPRFANTTLELHYSVGERAGST 183 G A G G+ ++ + R++N I Y SP F + Y GE+ G Sbjct: 125 NDIGGIASAGGFGVPGTVHSKGLDRTDGQRLNNSIRYNSPNFNGLSFSGIYGFGEQVGRA 184 Query: 184 AGNAVYQIGMQTQQGPVYVGSAY--------------LNANNSTN---------TNSVKQ 220 G +G Q GP+ +G Y +NA + N +K Sbjct: 185 VGGRSIGLGSQYVNGPLSLGLGYFQSKMGGGSDGSSDVNAKAACNGAGEKDHAGDTCLKT 244 Query: 221 FMLGGNVDYGSGKVYLAF---------FRTNEVISATTGNVFTNPAGK-YDPAGAVVGNT 270 + L +G KVY AF T G ++ G Y+P+ A + Sbjct: 245 WTLAAAYQFGPAKVYGAFSHVRLPLAKLHTKVRKDNNFGAMYDAKTGTGYNPSDATAFSI 304 Query: 271 AGDYHN---TYSLSADYRINAQTTVGAGGGYVKDSSRYNNNAR--QFSLIVNYDLSKRTR 325 G H T+ + Y++ T+ + + + + R Q +L YDLSKRT Sbjct: 305 GGANHKSSQTFDIGMSYQLMPSLTLMSAVQHTRAKFVGAASGRLLQLNLGAKYDLSKRTS 364 Query: 326 LYAVASRLINQNTAAYRMTGASFTASQALSPDAGASETGVQLGIRHTF 373 YA+ +N + M + Q P S+T + G+ HTF Sbjct: 365 AYALV-----RNLRSSDMYNVGLSKDQ--EPGIDRSQTAISTGLIHTF 405 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,091,697 Number of extensions: 44841 Number of successful extensions: 191 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 14 Length of query: 373 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 286 Effective length of database: 1,207,925 Effective search space: 345466550 Effective search space used: 345466550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)