BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0067.p
         (232 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313743|ref|YP_003777835.1| 2-demethylmenaquinone methyltra...   141   4e-35
gi|300313736|ref|YP_003777828.1| demethylmenaquinone methyltrans...   108   5e-25

>gi|300313743|ref|YP_003777835.1| 2-demethylmenaquinone
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  141 bits (356), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 116/205 (56%)

Query: 24  VQQLGQFGVATVHEAQGRTGLLKPYLRPIYPGTTISGTAVTVLLHPGDNWMMHVVAEQIR 83
           +QQL   G ATV+EAQG  G L   ++PI P + ++G A+TV   PGDN ++H    Q +
Sbjct: 7   IQQLRALGSATVYEAQGAKGALDHGMKPIDPASRLAGPALTVDARPGDNLVLHYAVLQAK 66

Query: 84  PGDIVVAAITAECTDGYFGDLLATSFMARGARALIIDAGVRDVKVLKEMGFPVWSRAISA 143
           PGD++V    A    G +GD+L    M +G   L+++  VRD   + ++GFPV+ R +S 
Sbjct: 67  PGDVLVVDAKAFMEAGPWGDVLTVLAMKKGIAGLVVNGCVRDANTIIDLGFPVFCRGLSI 126

Query: 144 KGTIKATPGSVNVPVICAGALVNPGDVIVADDDGVVAVPAADAVRVAEVARKREALEGEK 203
           KGT K  PG VNVP++    L++PGD+IV D DG+  V  ++       +  RE  E + 
Sbjct: 127 KGTGKHQPGKVNVPIVIGDVLIHPGDIIVGDRDGLAVVAQSEVEMTIASSMVREEKEQKM 186

Query: 204 RAQLAAGVLGLDMYQMRAPLEAAGL 228
           R  +  G   +++ Q+   L+  G+
Sbjct: 187 REAIENGASTVELMQLDTILKQYGM 211


>gi|300313736|ref|YP_003777828.1| demethylmenaquinone
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  108 bits (269), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 106/197 (53%)

Query: 14  RQIERADAAAVQQLGQFGVATVHEAQGRTGLLKPYLRPIYPGTTISGTAVTVLLHPGDNW 73
           R IER DA+ V +  QF  + + +  GR G L   + P+ P   ++G AVTV + PGDN 
Sbjct: 9   RDIERVDASVVAKAAQFPASILADVAGRRGTLCSRVAPLSPSMRVAGPAVTVEVRPGDNL 68

Query: 74  MMHVVAEQIRPGDIVVAAITAECTDGYFGDLLATSFMARGARALIIDAGVRDVKVLKEMG 133
           M+H      +PGD++V     + T    G+++ +   A G   +II   VRD++ ++E+G
Sbjct: 69  MIHAAMAIAKPGDVLVIDGKGDETCALMGEIMVSQCKASGLAGIIIYGSVRDIEAIREIG 128

Query: 134 FPVWSRAISAKGTIKATPGSVNVPVICAGALVNPGDVIVADDDGVVAVPAADAVRVAEVA 193
           FPV++   +  G  K   G VN P+   G  V PGD+IV D DGVV V    A  + E A
Sbjct: 129 FPVYAVGANPNGPTKNIAGRVNWPISVGGTAVQPGDLIVGDADGVVVVEREKAGSLLEAA 188

Query: 194 RKREALEGEKRAQLAAG 210
            K+ A E ++  ++  G
Sbjct: 189 AKKVADETKRLTEIRGG 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 690,745
Number of extensions: 26465
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 232
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,231,600
Effective search space: 184740000
Effective search space used: 184740000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)