BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0065.p
         (386 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311597|ref|YP_003775689.1| transmembrane protein [Herbaspi...   172   4e-44

>gi|300311597|ref|YP_003775689.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  172 bits (436), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 137/394 (34%), Positives = 198/394 (50%), Gaps = 37/394 (9%)

Query: 18  LAIPCTLMRGGTSRGPFFVADDLPEDIA----ARDRVLLAALGSPD--RRQIDGLGGAHP 71
           + IP T +RGGTS+G FF  DDLPE       ARD++L   +GSPD   +QIDG+GGA  
Sbjct: 7   IRIPATYLRGGTSKGVFFKLDDLPEAARVPGPARDKLLQRVIGSPDPYGKQIDGMGGATS 66

Query: 72  LTSKAGIVSRSRVTGVDLDFLFAQLQPESDRVDTTPNCGNMLAAVLPFAIERGLIVAG-- 129
            TSK  I+SRS   G D+D+LF Q+  + D VD + NCGN+ AAV PFAI  GL+     
Sbjct: 67  STSKTVIISRSVRPGHDVDYLFGQVSIDQDFVDWSGNCGNLSAAVGPFAIAAGLVDPSRL 126

Query: 130 PETTTARILTLNTGMQCDVTVQTP--GGRLRYRGDTRIDGVPGSAAPVSINFLD---TAG 184
           P+   A I      +   +    P  GG+++  GD  +DGV   AA V + F+D      
Sbjct: 127 PQDGVAVITIWQANIGKTIVAHVPMRGGQVQETGDFELDGVTFPAAEVQLEFMDPAAEEE 186

Query: 185 SVCPAMLPTGRVQDSVRYVTPSGEQRETAATLIDNGMPMVLVRASDFGLNGDESVAVLNA 244
               AM PTG V D++        Q    AT+I+ G+P + ++A + G  G E    +N+
Sbjct: 187 GAGGAMFPTGNVVDTLEVPGVGSFQ----ATMINAGIPTIFLKAEEIGYTGTELQDAINS 242

Query: 245 DAVLKERLEALRLACGPLMGL----GEVSARNY-PKMCLLSAP-----VAGGTIS----- 289
           D     R E +R      MGL     E + R + PK+  ++AP      +G T++     
Sbjct: 243 DPAALARFETIRAHGAMRMGLISKVEEAATRQHTPKVAFVAAPREYVSSSGKTVTVQDTD 302

Query: 290 --TRCFIPHVCHEAIGVLAAVTVATACVLEGSVAQGLALPGSGLQRTVSVEHPSGEFSVE 347
              R       H A+   AAV + TA  + G++    A  G G + +V   HPSG   V 
Sbjct: 303 VLVRAMSMGKLHHAMMGTAAVAIGTAAAIPGTLVNLAA--GGGERNSVRFGHPSGTLRVG 360

Query: 348 LELDPHDQQQILRAALL-RTARPILRGEVLIPAE 380
            E    D Q ++  A++ R+AR ++ G V +P +
Sbjct: 361 AEAKLEDGQWVVTKAIMSRSARVLMEGWVRVPGD 394


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,290,776
Number of extensions: 56325
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,207,925
Effective search space: 361169575
Effective search space used: 361169575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)