BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0064.p (401 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310375|ref|YP_003774467.1| LysR family transcription regul... 112 4e-26 gi|300310701|ref|YP_003774793.1| LysR family transcription regul... 85 1e-17 gi|300309487|ref|YP_003773579.1| LysR family transcription regul... 85 1e-17 gi|300313740|ref|YP_003777832.1| LysR family transcription regul... 82 9e-17 gi|300310484|ref|YP_003774576.1| LysR family transcription regul... 77 3e-15 >gi|300310375|ref|YP_003774467.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/308 (29%), Positives = 135/308 (43%), Gaps = 1/308 (0%) Query: 91 RNGQPVGSLDALFNERRLQAAALLAETHHMPSVARLMEVSPSAVSQALSMLEGILGQALF 150 +N P L A R+L L +T ++ A + ++ A S+ L LE +LG ALF Sbjct: 2 KNSDPNWFLRARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVALF 61 Query: 151 FRTAHGMLPTDAGRRWTERFGRALAELRHIPEDIAALDGVVQGTVTVGALPLARSQLLPA 210 R GM PT G AL L EDI AL + G V VG + LLP Sbjct: 62 ERLPRGMRPTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMALLPP 121 Query: 211 AMTRVLARHPRLQIRSLESPYEELAAGLMSGRIDFIVG-ALRAFSSDTFDMRPLVADSAA 269 A+ RV + P L+I L + L+ G +DFI+G L + L + Sbjct: 122 AIARVKEQAPMLRIGVEVESSNILLSRLLHGELDFIIGRILDDEARGGLLYEELADEPIC 181 Query: 270 LIARAGHPLARRKKLSLRDLDGYPWVLSRAGTPLRDSIEQFFRDSHWHAPRPAVETGDLA 329 +AR GHP R LSL DL W+++ G+ LR +Q FR+ P V+T + Sbjct: 182 AVARVGHPFHARTDLSLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAIL 241 Query: 330 LLRGLLVGSDMLTVISAHQLQHEIATGQLTTLPFAMRGMERRIGLMQRKGAHLSPGARAL 389 + LL +D + + ++ + LP + G++ R+ LSPGA + Sbjct: 242 FITSLLQQTDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANLV 301 Query: 390 QEAIEAVA 397 +AI VA Sbjct: 302 LQAIREVA 309 >gi|300310701|ref|YP_003774793.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 138/299 (46%), Gaps = 4/299 (1%) Query: 94 QPVGSLDALFNERRLQAAALLAETHHMPSVARLMEVSPSAVSQALSMLEGILGQALFFRT 153 Q + SL + ++LQ L E + + + ++ SA S++L+ LE +L LF RT Sbjct: 15 QSLNSLLSRLRMKQLQLLIALDEHKSLHKASSALAMTQSAASKSLAELESMLDAQLFERT 74 Query: 154 AHGMLPTDAGRRWTERFGRALA-ELRHIPEDIAALDGVVQGTVTVGALPLARSQLLPAAM 212 G++ G R+ R +A +L + E++A + G + +GA+ A L+ A+ Sbjct: 75 KSGLIANPFGH-CVIRYARLMATDLGSLCEEMAQIRSGQGGRLAIGAVMGAVPALIVPAV 133 Query: 213 TRVLARHPRLQIRSLESPYEELAAGLMSGRIDFIVG-ALRAFSSDTFDMRPLVADSAALI 271 + RHP L I +E + L G +D +V A + + + L + +++ Sbjct: 134 DALQRRHPALSIEIVEDTSLHMLDLLDEGHLDLLVARASVSAHPGKYHYQSLSEEPLSVV 193 Query: 272 ARAGHPLARRKKLSLRDLDGYPWVLSRAGTPLRDSIEQFFRDSHWHAPRPAVETGDLALL 331 A HP R K+L L L GY W+ + PL +E+ + P + T + Sbjct: 194 VSAEHPRPRGKELQLAALAGYRWITYPSHMPLHAVLEREMDLAGLSMPANTIATASTFVT 253 Query: 332 RGLLV-GSDMLTVISAHQLQHEIATGQLTTLPFAMRGMERRIGLMQRKGAHLSPGARAL 389 LL G+DM++++ + + G L LP +R M + IG++ RKG LS +A Sbjct: 254 VALLQQGADMVSILPTAVAEMFVQRGMLRILPVKLRSMSQTIGIVTRKGGQLSGAGQAF 312 >gi|300309487|ref|YP_003773579.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 115/256 (44%), Gaps = 5/256 (1%) Query: 135 SQALSMLEGILGQALFFRTAHGMLPTDAGRRWTERFGRAL-AELRHIPEDIAALDGVVQG 193 S+AL +E LG LF RT G+ PT+ G R+ R + +L H+ E++ A+ G Sbjct: 47 SKALQEIESTLGVQLFTRTNRGLEPTELGH-CVIRYARLIQTDLTHLREEMLAIMQGHGG 105 Query: 194 TVTVGALPLARSQLLPAAMTRVLARHPRLQIRSLESPYEELAAGLMSGRIDF-IVGALRA 252 + VG + + LL A+TR+L HP L + +E L L GR+D I + Sbjct: 106 RLAVGTI-MGAVPLLTDALTRLLEAHPALSVEIVEDTSARLLRLLDQGRLDLAICRTSIS 164 Query: 253 FSSDTFDMRPLVADSAALIARAGHPLARRKKLSLRDLDGYPWVLSRAGTPLRDSIEQFFR 312 D +D + + A++A HPLA L L DL WV+ A P+R ++E+ F Sbjct: 165 QRPDLYDAFNIHEEELAVVASVQHPLADAPSLQLADLADSRWVVYSANMPMRLTLEREFH 224 Query: 313 DSHWHAPRPAVETGD-LALLRGLLVGSDMLTVISAHQLQHEIATGQLTTLPFAMRGMERR 371 D+ P +ET L L + ++S Q G LP + Sbjct: 225 DADLRFPLHLMETTSAFTTLSLLQKNPHFVALLSVDVAQFCTRFGMTRILPLRLHTRSEP 284 Query: 372 IGLMQRKGAHLSPGAR 387 L+ R+G LSP AR Sbjct: 285 YQLVTRRGTMLSPVAR 300 >gi|300313740|ref|YP_003777832.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 125/286 (43%), Gaps = 8/286 (2%) Query: 106 RRLQAAALLAETHHMPSVARLMEVSPSAVSQALSMLEGILGQALFFRTAHGMLPTDAGRR 165 R L+ ++AE H+ A + + A+++ + LE LG LF R G+ T G Sbjct: 4 RDLKYFTVIAEEGHVGRAAERLYKTQPALTKCIDRLEEQLGAPLFERLGRGIRLTAVGEA 63 Query: 166 WTERFGRALAELRHIPEDIAALDGVVQGTVTVGALPLARSQLLPAAMTRVLARHPRLQIR 225 R + + +I +G + +G +P +LP ++L ++ I Sbjct: 64 LLNRARQISLMMDETAREIGDYAHGREGNIRLGCVPTLAEHVLPGVCQQLLGEAQKVTID 123 Query: 226 SLESPYEELAAGLMSGRIDFIVGALRAFSSDTFDMRPLVADSAALIARAGHPLARRKKLS 285 S + L AGL +G +D ++G + + F ++ D ++A HP+ KK+ Sbjct: 124 LKVSMNDALLAGLKAGELDIVLGPMIQ-DDELFHTEEIMQDQMVVMASPQHPIF-DKKIR 181 Query: 286 LRDLDGYPWVLSRAGTPLRDSIEQFFRDSHWHAPRPAVETGD--LALLRGLLVGSDMLTV 343 LR L Y WVL R ++ F D H H PRP V+ L ++ L+ S++L Sbjct: 182 LRHLLDYQWVLPAQSVLSRQWLDNVF-DRH-HLPRPKVQITPTVLNMILPLIERSNLLGF 239 Query: 344 ISAHQLQHEIATGQLTTLPFAMRGMERRIGLMQRKGAHLSPGARAL 389 S L G L + M RR+GL R+ +LSP A+ L Sbjct: 240 ASKLNLSE--GRGHLREVVLKETTMLRRMGLTYRRDMYLSPAAQRL 283 >gi|300310484|ref|YP_003774576.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 132/294 (44%), Gaps = 8/294 (2%) Query: 103 FNERRLQAAALLAETHHMPSVARLMEVSPSAVSQALSMLEGILGQALFFRTAHGMLPTDA 162 FN ++L+ + + A L+ ++ A+S+A+ LE +G ALF R GM T Sbjct: 3 FNLQQLEMFNAIVSAGSLGRAAALLNLTQPALSRAIKRLEESVGGALFERHTKGMHLTVL 62 Query: 163 GRRWTERFGRALAELRHIPEDIAALDGVVQGTVTVGALPLARSQLLPAAMTRVLARHPRL 222 G+ E + E++ A+ G+ +G + VGA+ S +LP A+ VL + P L Sbjct: 63 GQALLPHAMSLQREAQQAREELDAIRGLAKGVIKVGAVGSIASLVLPLAVRGVLDKWPNL 122 Query: 223 QIRSLESPYEELAAGLMSGRIDFIVGALRAFSSDTFDMRPLV----ADSAALIARAGHPL 278 ++ +E ++ L GL++ ID AL T + + D + ++A HPL Sbjct: 123 RVEIIEGVWDRLVEGLLTHEIDL---ALSTSGGQTEGVAAIADCCWTDLSYVVAAPDHPL 179 Query: 279 ARRKKLSLRDLDGYPWVLSRAGTPLRDSIEQFFRDSHWHAPRPAVETGDLALLRGLLVGS 338 ++ +++L G W L+ GT +++ F P AVE+ + +L+ L+ Sbjct: 180 RQQGRIALEQTLGQRWALTPKGTGPYLHVQETFARHGLPMPEIAVESRSVTVLKSLVARC 239 Query: 339 DMLTVISAHQLQHEIATGQLTTLPFAMRGMERRI-GLMQRKGAHLSPGARALQE 391 + +S E G + L A R + +R+G +P AR L E Sbjct: 240 GFIGWMSGPMFDTERQAGVIVALEVAGLDAPRTLTAFRRRQGILPAPAARLLDE 293 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,165,307 Number of extensions: 50872 Number of successful extensions: 381 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 374 Number of HSP's successfully gapped: 28 Length of query: 401 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 314 Effective length of database: 1,207,925 Effective search space: 379288450 Effective search space used: 379288450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)