BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0061.p (832 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 1454 0.0 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 1122 0.0 gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspiri... 375 e-105 gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 355 1e-98 gi|300309592|ref|YP_003773684.1| VGR-related protein [Herbaspiri... 292 8e-80 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 1454 bits (3764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 700/835 (83%), Positives = 755/835 (90%), Gaps = 3/835 (0%) Query: 1 MPSPSQKDSSRSQARITQHRRLLQLDSPLGPDLLLPQRLIATERLNHGYEVTLDLLATRT 60 MPSPS DS RSQARITQHRRLLQLDS LGPD+LLPQRL+ATERLN GYEVT+DLLAT T Sbjct: 1 MPSPSPNDSRRSQARITQHRRLLQLDSSLGPDILLPQRLVATERLNDGYEVTIDLLATHT 60 Query: 61 GIALEQLIAQPVTLWIRQHEGDTLPWHGYVHTAKRLGSDGEIDFCQLSFSPWLHFLRFRK 120 GIALEQLIAQPVTLWIRQH+GDTLP HGYVHTAKRLGSDGE+DFCQLS SPWLHFLRFRK Sbjct: 61 GIALEQLIAQPVTLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRK 120 Query: 121 DARIWQDKTTEDILADVFDGHPQARGHYRFELERPSLARSYCTQYETDWNFVQRLMEEEG 180 DARIWQDK TEDILADVF+ HPQARGHYRF+LERP R YCTQYETDW+FVQRLMEEEG Sbjct: 121 DARIWQDKRTEDILADVFNNHPQARGHYRFQLERPYTPRPYCTQYETDWHFVQRLMEEEG 180 Query: 181 WFAHHEQQEDGGGHALVITDNTFSLPGLPRQGIAFHGAGPRDELDKILQWSASRTLSSKS 240 WFAHHEQ+EDG GH LVITDNT++LPGLP+QGIAFHGA PRDELDKIL WSASRTLSSK Sbjct: 181 WFAHHEQREDGSGHVLVITDNTWNLPGLPQQGIAFHGAAPRDELDKILHWSASRTLSSKG 240 Query: 241 WRGRSDDYKSPRLQKEAEEQVMAEYGLLPAQLEVYEYTGAYSFAQQEQGNRQADLQVEQW 300 WRGRSDDYKSP ++KEAEEQVM EYG LPAQLE+YEYTGAYSF QEQGNRQADLQVEQW Sbjct: 241 WRGRSDDYKSPGMKKEAEEQVMPEYGQLPAQLEMYEYTGAYSFRLQEQGNRQADLQVEQW 300 Query: 301 ESAMQRYSAVSGVRNLACGRWFRLEDHPLHRKEPESDRQFVILAIDWFIENNLPLSHQAL 360 ES+MQRYSAVSGVRNLACGRWFRLE+HP HR EP+ +RQFVILAIDWF+ENNLPLSHQAL Sbjct: 301 ESSMQRYSAVSGVRNLACGRWFRLEEHPQHRAEPDRERQFVILAIDWFVENNLPLSHQAL 360 Query: 361 DFPGSLSAALLAFKESIRRERQVDETENEHTGHCFNRFEVQRRKLPFRPARSHARPVMLP 420 DFPGSL AL+AFKESIRRERQV ET+NEHTGHCFNRFEVQRRKLPFRPAR+HARPVMLP Sbjct: 361 DFPGSLKGALMAFKESIRRERQVAETDNEHTGHCFNRFEVQRRKLPFRPARAHARPVMLP 420 Query: 421 QTAIVVGPAGEEVYTDPLDRIKVQFRWDRINPGNEAASCWVRVSYANAGEYWGAVHVPRI 480 QTAIVVGPA EEVYTD LDRIKVQFRWDRINPGNEAASCWVRVSY NAG+YWGA+ VPRI Sbjct: 421 QTAIVVGPASEEVYTDHLDRIKVQFRWDRINPGNEAASCWVRVSYPNAGQYWGAIQVPRI 480 Query: 481 GQEVIVSFLNGDPDRPVVTGRLFNEEQRPQWHSNGRLSGFKSKEFGGAGFNQLVMDDTSE 540 GQEVIVSFLNGDPDRPVVTGRLFN EQRPQWH+NGRLSG KSKEFGG GFNQ+VMDDT E Sbjct: 481 GQEVIVSFLNGDPDRPVVTGRLFNAEQRPQWHTNGRLSGVKSKEFGGTGFNQMVMDDTPE 540 Query: 541 QNRIHLYSTHTHAQLNLGHLVSQTGNERRHFFGTGFALSTDAYGAIVTHKGLYISTYGRP 600 QNRIHLYST+THAQLNLGHLVSQTGNERR FFG+GFALSTDAYGAIVTHKGLYISTYGRP Sbjct: 541 QNRIHLYSTNTHAQLNLGHLVSQTGNERRSFFGSGFALSTDAYGAIVTHKGLYISTYGRP 600 Query: 601 GAQGTQLDASEATGQLKTASAMSQQLSESAAKADAEALGGLDALGKMIEATQGTYPEAAQ 660 GAQGTQLDA EATGQLK+ + +S+ LSE+AAKA AE L G +AL I+ATQ Y + +Q Sbjct: 601 GAQGTQLDAREATGQLKSGANLSRTLSETAAKAGAEPLAGQEALRDFIDATQADYEDPSQ 660 Query: 661 SEAHRFKQAILLAASPDGIGLTTRKGLHAHAGEEITLSSGSDTSIATGKSLLASVAEKIS 720 ++A+RF+QAILLAASPDGIGLTT KG+H HAG EITLSSG+DTSIA GKSLLASVAEKIS Sbjct: 661 AQANRFQQAILLAASPDGIGLTTPKGVHTHAGGEITLSSGADTSIAVGKSLLASVAEKIS 720 Query: 721 LFAFKAGIKLFSAKGKVEVQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFI 780 LFAFKAGIKLFSAKGKVEVQAQSDDL+LIAEKVARLLS SGRVEI AK+EV+I+AGGSFI Sbjct: 721 LFAFKAGIKLFSAKGKVEVQAQSDDLELIAEKVARLLSASGRVEIRAKEEVLITAGGSFI 780 Query: 781 QINASGITQGTAGTWEAKASQHAMTGPARVSYAMPLLPAS---DLNLPKRYPYSQ 832 ++NASGITQGT+G WEAKA HAM GP ++Y M A+ D R+PY Q Sbjct: 781 RLNASGITQGTSGAWEAKAGTHAMPGPTTLAYEMNKSSAALPFDEEFVLRWPYDQ 835 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 1122 bits (2901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 530/807 (65%), Positives = 651/807 (80%), Gaps = 2/807 (0%) Query: 16 ITQHRRLLQLDSPLGPDLLLPQRLIATERLNHGYEVTLDLLATRTGIALEQLIAQPVTLW 75 + Q +R+L+LDS LGPD+LLPQR++ +ERL GY+ T+DL++TR I L++LIAQPVTLW Sbjct: 28 VGQEKRILKLDSVLGPDVLLPQRMVGSERLGRGYDYTIDLVSTRDDIELKKLIAQPVTLW 87 Query: 76 IRQHEGDTLPWHGYVHTAKRLGSDGEIDFCQLSFSPWLHFLRFRKDARIWQDKTTEDILA 135 ++Q D P HGYVHTA+RLGSDG++ Q+ +PWLHFL++RKDARIWQD +DILA Sbjct: 88 LQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFLKYRKDARIWQDSKADDILA 147 Query: 136 DVFDGHPQARGHYRFELERPSLARSYCTQYETDWNFVQRLMEEEGWFAHHEQQEDGGGHA 195 DVFD H ARG+YRFE+ P+L RSYCTQYETDW+FVQRLMEEEGW+A+HEQ+ DG GH Sbjct: 148 DVFDQHAYARGNYRFEIVTPALPRSYCTQYETDWHFVQRLMEEEGWYAYHEQKPDGSGHV 207 Query: 196 LVITDNTFSLPGLPRQGIAFHGAGPRDELDKILQWSASRTLSSKSWRGRSDDYKSPRLQK 255 LVITDNT L + +AFHGAG +DE+++IL WSASR L+S R+DDYKSP QK Sbjct: 208 LVITDNTDQAKPLAPEQLAFHGAGTQDEVNRILHWSASRGLASTRLATRTDDYKSPGDQK 267 Query: 256 EAEEQVMAEYGLLPAQLEVYEYTGAYSFAQQEQGNRQADLQVEQWESAMQRYSAVSGVRN 315 + +E+V+ E+G LP +LEVYEY+G YS+A+Q+ G+RQA L+VEQWES+M+R+ VSG R Sbjct: 268 QTQERVLPEHGALPGELEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFMGVSGART 327 Query: 316 LACGRWFRLEDHPLHRKEPESDRQFVILAIDWFIENNLPLSHQALDFPGSLSAALLAFKE 375 LA GRWF L DHP HR + + D QF+++A++WFIENNLPLS A DFPGSL L AFK Sbjct: 328 LAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTARDFPGSLKPQLDAFKA 387 Query: 376 SIRRERQVDETENEHTGHCFNRFEVQRRKLPFRPARSHARPVMLPQTAIVVGPAGEEVYT 435 S+ R D N TGHCFNRFEVQRRKLP+R H +PVM PQTA+VVGP GEEV+T Sbjct: 388 SMGRSND-DAGGNARTGHCFNRFEVQRRKLPYRSPFDHTKPVMHPQTAVVVGPQGEEVFT 446 Query: 436 DPLDRIKVQFRWDRINPGNEAASCWVRVSYANAGEYWGAVHVPRIGQEVIVSFLNGDPDR 495 D L+R+KVQFRWDRINPG+E ASCWVRVSY NAGE WG V VPR+GQE+I+SFLNGDPDR Sbjct: 447 DKLNRVKVQFRWDRINPGDEKASCWVRVSYPNAGENWGEVKVPRVGQELIISFLNGDPDR 506 Query: 496 PVVTGRLFNEEQRPQWHSNGRLSGFKSKEFGGAGFNQLVMDDTSEQNRIHLYSTHTHAQL 555 PV TGRLFN+EQ PQWH++GRLSG KSKEFGG GFNQLVMDDT+ QNR+HLYS+ ++AQL Sbjct: 507 PVATGRLFNQEQPPQWHTDGRLSGLKSKEFGGNGFNQLVMDDTTSQNRVHLYSSQSNAQL 566 Query: 556 NLGHLVSQTGNERRHFFGTGFALSTDAYGAIVTHKGLYISTYGRPGAQGTQLDASEATGQ 615 NLG+LVSQ NERR+F+G+GFALSTD YGA+VT KGLY+S+YGRPG QGTQLDASEAT Sbjct: 567 NLGYLVSQADNERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGRPGPQGTQLDASEATSL 626 Query: 616 LKTASAMSQQLSESAAKADAEALGGLDALGKMIEATQGTYPEAAQSEAHRFKQAILLAAS 675 +K ++ +++ LS+SA++A AEAL D+L ++AT+ Y Q A+RFK+ +L+ A+ Sbjct: 627 MKASADLARGLSDSASRAGAEAL-AQDSLKDFVDATEDKYSGQGQGSANRFKKPLLMMAA 685 Query: 676 PDGIGLTTRKGLHAHAGEEITLSSGSDTSIATGKSLLASVAEKISLFAFKAGIKLFSAKG 735 P GIGL T +G H+ +E TL+SG DTSIA+GKSLLA+V EKISLFA AG+KLF+AKG Sbjct: 686 PAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLLATVKEKISLFAQNAGMKLFAAKG 745 Query: 736 KVEVQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFIQINASGITQGTAGTW 795 KVE+QAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFIQIN++GITQGT G W Sbjct: 746 KVEIQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFIQINSAGITQGTPGKW 805 Query: 796 EAKASQHAMTGPARVSYAMPLLPASDL 822 EAKAS H+M GPA ++ MP + S+L Sbjct: 806 EAKASLHSMPGPASQNFVMPHVQKSEL 832 >gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 824 Score = 375 bits (964), Expect = e-105, Method: Compositional matrix adjust. Identities = 276/828 (33%), Positives = 415/828 (50%), Gaps = 82/828 (9%) Query: 15 RITQHRRLLQL-----DSPLGPDLLLPQRLIATERLNHGYEVTLDLLATRTGIALEQLIA 69 R QH R+LQL D+P LL RL A+E L+ Y TL+LL+ I L+ ++ Sbjct: 13 RQRQHNRILQLFFINDDAPDAE--LLINRLEASEALSRDYVYTLELLSDDAHIPLDAMMG 70 Query: 70 QPVTLWIRQHEGDTLPWHGYVHTAKRLGSDGEIDFCQLSFSPWLHFLRFRKDARIWQDKT 129 + + + + + +G + GYV L SDG I F + PWL FL R + RI+ + Sbjct: 71 KLLRVALTRADGTQRHFTGYVERFAFLRSDGGIAFYEARLVPWLAFLASRHNNRIFHHLS 130 Query: 130 TEDILADVFDGHPQARGHYRFELERPSLARSYCTQY-ETDWNFVQRLMEEEGWFAHHEQQ 188 E + A +F +P + +L R+ Q+ E+D N + R E+ GW H+E Q Sbjct: 131 LEGLSAAIFRAYPM-HARWDCQLRHGDPVRTEMFQFDESDSNLLHRRWEDAGWHYHYEHQ 189 Query: 189 EDGGGHALVITDN-TFSLPGLPRQGIAFHGAGPRDELDKILQWSASRTLSSKSWRGRSDD 247 DG H L ++D+ T++ P + F G E D + QWSA R S R S D Sbjct: 190 ADG--HQLRLSDDSTYAKPIDGTGQVPFQRHGGAIEEDGMAQWSAVRQFQPSSTRLSSYD 247 Query: 248 YKSPRLQKEAEEQVMAEYGLLPAQLEVYEYTGAYSFAQQEQGNRQADLQVEQWESAMQRY 307 +K+ R Q E E + + G + Q+E YEY GAY FA ++ G+RQ+ L++E++E+A Q + Sbjct: 248 FKAARPQ-EVEVPTLNKQGAV-LQVEHYEYAGAYGFANRDDGDRQSRLRMEEFEAAAQVF 305 Query: 308 SAVSGVRNLACGRWFRLEDH---PLHRKEPESDRQFVILAIDWFIENNLPLSHQALDFPG 364 R L GR FRL H + + D + +I++++ NN + F Sbjct: 306 EGTGNCRFLQPGRTFRLTGHFSGSAASHDHDRDPELLIISVEHSATNNYLQDSETPPFYA 365 Query: 365 SLSAALLAFKESIRRERQVDETENEHTGHCFNRFEVQRRKLPFRPARSH-ARPVML--PQ 421 NR R+++P+RP RS+ ++P L Q Sbjct: 366 -------------------------------NRVRCVRKRIPWRPGRSYYSQPTALLGIQ 394 Query: 422 TAIVVGPAGEEVYTDPLDRIKVQFRWDRINPGNEAASCWVRVSYANAGEYWGAVHVPRIG 481 TA VVGPAGE ++ D R+KVQF WD+I +E +S W+RV+ + +G G V VPRIG Sbjct: 395 TATVVGPAGENLHVDEYGRVKVQFHWDQIGRNDERSSAWLRVASSWSGGEQGLVSVPRIG 454 Query: 482 QEVIVSFLNGDPDRPVVTGRLFNEEQRPQWH--SNGRLSGFKSKEFG-------GAGFNQ 532 Q VIV +L G PDRP++TG + N+ P W S LSG +S+E G Sbjct: 455 QLVIVQWLGGHPDRPIITGSVVNQLNMPPWTLPSQSALSGMRSRELAPRTGNAPGGRSGH 514 Query: 533 LVMDDTSEQNRIHLYSTHTHAQLNLGHLVS-QTGNERRHFFGTGFALSTDAYGAIVTHKG 591 ++ DDT E + + S +QL LGH+ + R+ G GF L TDA+G + +G Sbjct: 515 VLFDDTHEAIQTQVRSDAFDSQLALGHITRIERHAGRQDARGEGFELRTDAHGVVRAAQG 574 Query: 592 LYISTYGRPGAQGTQLDASEATGQLKTASAMSQQLSESAAKADA--------EALGGLDA 643 L +++ RP A D E +L A + LS+ A + +A +A + A Sbjct: 575 LLLTSEPRPKAHRHTTDIGETVARLTQARGTVESLSKLAQEHEAQDKNADQYDAAQAIKA 634 Query: 644 LGKMIE----ATQGTYPEAAQSEAHRFKQAILLAASPDGIGLTTRKGLHAHAGEEITLSS 699 I+ A G +PE +E H L+ +SP GI ++ H + E L++ Sbjct: 635 QNDAIKGDGAAKGGRFPEL--TEPH------LVLSSPSGIEASSGASTHLASAEHAALTA 686 Query: 700 GSDTSIATGKSLLASVAEKISLFAFKAGIKLFSAKGKVEVQAQSDDLDLIAEKVARLLST 759 GS S+A GKS AS AEK+SL A++ G KL +A G+VE+QAQ+D ++L+A+KV ++ST Sbjct: 687 GSHISLAAGKSFFASAAEKLSLLAYRLGAKLIAASGRVEIQAQNDGMELLAQKVVDIIST 746 Query: 760 SGRVEIHAKDEVMISAGGSFIQINASGITQGTAGTWEAKASQHAMTGP 807 + + AK + ++ GGS + I A GIT T G A+ H GP Sbjct: 747 RDWINLKAKKGIRLNGGGSELVI-AEGITGFTQGAHHVHAADHQTLGP 793 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 355 bits (910), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 276/892 (30%), Positives = 423/892 (47%), Gaps = 105/892 (11%) Query: 16 ITQHRRLLQLDSPLG---PDLLLPQRLIATERLNHGYEVTLDLLATRTGIALEQLIAQPV 72 ++Q+ RL+ + + P+ L +R E +N + +D L+ T + L+Q I + Sbjct: 21 LSQNARLITMTTAQSAGLPETLAVERFEGEESVNDNFRFDIDALSISTDLDLKQFIGAEI 80 Query: 73 TLWIRQHEGDTLPWHGYVHTAKRLGSDGEIDFCQLSFSPWLHFLRFRKDARIWQDKTTED 132 +L + Q +G T WHGY A LG+DG + +L +L FL R D+ ++QD T D Sbjct: 81 SLRLLQADGGTRAWHGYCTQASWLGADGGLARYRLRLESFLAFLDRRHDSFLFQDMTVTD 140 Query: 133 ILADVFDGHPQARGHYRFELERPSLARSYCTQY-ETDWNFVQRLMEEEGW---FAH---- 184 I A V +PQA ++ E+ + R CTQY ETD+ F++R++ EG F H Sbjct: 141 IAAAVLKEYPQA--NFSLEVTQTLAKRDICTQYRETDYAFLRRILASEGLNFRFEHEQDD 198 Query: 185 ----HEQQEDGGGHALVITDNTFSLPGLP--RQGIAFHGAGPRDELDKILQWSASRTLSS 238 H+Q + H LVI D P LP + I FH + D I ++A R++ Sbjct: 199 ATQQHDQSQPHARHKLVIFDRNAKAPALPGGDEYIRFHRVAAMEASDAITDFAAVRSVRP 258 Query: 239 K-----SWRGRSDDYKSPRLQKEAEEQVMAEYGLLPAQLEVYEYTGAYSFAQQEQGNRQA 293 SW + SP EE + G LP+ L VY+ TG FA Q+ A Sbjct: 259 NGVALASWH--PEKLSSP----SHEEGSTLDAGELPS-LPVYDGTGQQDFADQDAAAAHA 311 Query: 294 DLQVEQWESAMQRYSAVSGVRNLACGRWFRLEDHPLHRKEPESDRQFVILAIDWFIENNL 353 L ++ E +R+ R LA G F L H + PE + F ++++ NN+ Sbjct: 312 QLMLQALEMQNKRFEGAGAARQLAAGARFTLLQH---ERYPEGENAFKVVSVRHAARNNV 368 Query: 354 PLSHQALDFPGSLSAALLAFKESIRRERQVDETENEHTGHCFNRFEVQRRKLPFRPARSH 413 + + P AA F S ER ++ G N F R +P PA Sbjct: 369 SANITRILAP----AAGALFGGSAAAERD----DDLQAGTYRNSFTAIRDSVPMVPAAIA 420 Query: 414 ARPVMLP-----QTAIVVGPAGEEVYTDPLDRIKVQFRWDR---INPG------------ 453 R + P QTA+V G A V TD R+KVQF W R NPG Sbjct: 421 ER--LKPTARGTQTALVTGAADAAVTTDRNHRVKVQFHWQRGKSPNPGGLRETGNLDDKD 478 Query: 454 -----NEAASCWVRVSYANAGEYWGAVHVPRIGQEVIVSFLNGDPDRPVVTGRLFNEEQR 508 N+++ W+RV+ A +G WG+ +PR+G EV+V F+ GD DRPVV +L+N Sbjct: 479 GNANGNDSSGTWIRVAEAQSGPNWGSQFIPRVGSEVLVDFIEGDIDRPVVVAQLYNGSDA 538 Query: 509 PQWHSN--------GRLSGFKSKEFGGAGFNQLVMDDTSEQNRIHLYSTHTHAQLNLGHL 560 P + + G +SG+ S G+GFNQ V+DDT Q R+ L S+ +QLNLGHL Sbjct: 539 PPFPAGADSGINHAGSISGWHSTAHDGSGFNQWVVDDTQSQLRMRLASSTAKSQLNLGHL 598 Query: 561 VSQ--TGNERRHFFGTGFALSTDAYGAIVTHKGLYISTYGRP----GAQGTQLDASEATG 614 V Q TG +R + G GF L +DA+G + +GL +ST RP GTQ+DA+ A Sbjct: 599 VEQADTGAQRGSYRGQGFELRSDAWGVVRGGEGLLLSTTARPLNGASVTGTQMDAAGAIA 658 Query: 615 QLKTASAMSQQLSESAAKADA----EAL-GGLDALGKMIEATQGTYPEAAQSE------- 662 QLK A +++Q +S+SA + A +AL D L + + QG +P + + Sbjct: 659 QLKGAKSLAQTMSDSATQQQALSSTQALQAKTDFLALIDPSDQGKHPASVNGQDALKSDG 718 Query: 663 ----------AHRFKQAILLAASPDGIGLTTRKGLHAHAGEEITLSSGSDTSIATGKSLL 712 +F +A +L SP I T+ +A E + ++ D + + Sbjct: 719 STRNTDAAQPVEKFAKAAVLMDSPSSINWTSNASTLLYAAENLQWTTQGDVHWSAADTAS 778 Query: 713 ASVAEKISLFAFKAGIKLFSAKGKVEVQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVM 772 A+ + S ++ GI+ F+A G V +QA +D L+++A+K + S + +EI A+ +++ Sbjct: 779 AAAGKAASFYSHDGGIQAFAANGPVSLQAHTDALEILADKDVTVTSVNDSIEIKARQKIV 838 Query: 773 ISAGGSFIQINASGITQGTAGTWEAKASQHAMTGPARVSYAMPLLPASDLNL 824 + AG + + + IT GT+ K + HA G A VS + LP + L Sbjct: 839 LQAGQASVTLEGGNITFACPGTFSVKGATHAFPGGASVSPDLMALPDTKYKL 890 >gi|300309592|ref|YP_003773684.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 966 Score = 292 bits (747), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 254/835 (30%), Positives = 387/835 (46%), Gaps = 86/835 (10%) Query: 34 LLPQRLIATERLNHGYEVTLDLLATRTGIALEQLIAQPVTLWIRQHEGDTLPWHGYVHTA 93 LL QR+ E L G +V L ++T + L L+ QP+ + + G +G + A Sbjct: 39 LLLQRVDIQETLLEGMQVQLTCVSTDPDLPLHTLLGQPLGVEMVTDRGRLHHTNGLITDA 98 Query: 94 KRLGSDGEIDFCQLSFSPWLHFLRFRKDARIWQDKTTEDILADVFDGHPQAR----GHYR 149 +DG + QL+ L + R + RI++ + IL + Q ++ Sbjct: 99 CAGHADGALRVYQLTMRDALSIMEGRVNTRIFRRLSVPSILEILLSEWRQRSSTLAAAFK 158 Query: 150 FELE----RPSLARSYCTQY-ETDWNFVQRLMEEEG--WFAHHEQQEDGGG--------- 193 F+L+ AR Q+ E+D +F++RL EG W+ QQ D Sbjct: 159 FDLDGLDDTRYPAREISHQFNESDAHFIRRLCRREGIAWYVASGQQADETAIATHADIPI 218 Query: 194 HALVITDNTFSLPGLPRQGIAFHGAGPRDELDKILQWSASRTLSSKS-WRGRSDDYKSPR 252 H LV D LP + +H G +E D I WS R+L S WR RS DYK+ R Sbjct: 219 HTLVFCDQPALLPRAAAGTVRYHRDGATEERDAISAWSRQRSLVPGSVWR-RSWDYKAVR 277 Query: 253 LQKEAEEQVMAEYGLLPAQLEVYEYTG----AYSFAQQEQGNRQADLQVEQWESAMQRYS 308 + EA + + G +L G ++ Q R AD ++ E+ + + Sbjct: 278 AE-EASSHSIVDQGDAGYKLANILRDGLIEAPHAADSQNDHLRLADTRMLAHEARSESFD 336 Query: 309 AVSGVRNLACGRWFRLEDHPLHRKEPESDRQFVILAIDWFIENNLPLSHQALDFPGSLSA 368 A VR+LA G WF L+ HP R + + R+F++ ++ ENN P Sbjct: 337 ASGTVRDLAVGHWFLLDGHPDMRGQKPAQREFLVTSLQQQAENNFPT------------- 383 Query: 369 ALLAFKESIRRERQVDETEN-EHTGHCF---NRFEVQRRKLPFRP---ARSHARPVMLPQ 421 +++IRR +N H+ N+ +RR P P R H PV P Sbjct: 384 ---VLQDAIRRLAPASPWKNLAHSAADLRYRNQLTCRRRTAPLAPHYDPRLHLPPVH-PI 439 Query: 422 TAIVVGPAGEEVYTDPLDRIKVQFRWDRINP------------GNEAASCWVRVSYANAG 469 TA+VVGP+ EEVY D L RIKVQ + ++P G+E S +VRVS A AG Sbjct: 440 TALVVGPSKEEVYCDELGRIKVQLQG--LHPEDHAHAQGAGASGHEQDSAFVRVSSAWAG 497 Query: 470 EYWGAVHVPRIGQEVIVSFLNGDPDRPVVTGRLFNEEQRPQWHS-------NGRLSGFKS 522 +G VPR+G EV++ FL GDPD+ V G L N P S N LSG K+ Sbjct: 498 AGYGHDAVPRVGMEVLIDFLGGDPDKMFVAGVLHNGINLPARFSHSGSLPGNRFLSGIKT 557 Query: 523 KEFGGAGFNQLVMDDTSEQNRIHLYSTHTHAQLNLGHLVSQTGNERRHFFGTGFALSTDA 582 KE GGA +NQL +DD+ Q L S H H+QLNLG+L R G G TD Sbjct: 558 KEIGGARYNQLRLDDSPGQISTQLASEHQHSQLNLGYLTEPRHGGRGEDRGEGLEARTDG 617 Query: 583 YGAIVTHKGLYISTYGRPGAQGTQLDASEATGQLKTASAMSQQLSESAAKADAEA--LGG 640 +G + KG+ I+ + +G L+ + L ++Q+LS AA+ AEA + Sbjct: 618 HGVMRAAKGVMITAQSQDRGRGRMLERAALLETLDNLQELAQRLSHDAARHHAEATDVAQ 677 Query: 641 LDALGKMIEA-TQGTYPEAAQSEAHRFKQAILLAASPDGIGLTTRKGLHAHAGEEITLSS 699 L+ + + A G A R + ++ +P G+ +T++ + A + I L S Sbjct: 678 LERIRAQLRAWDAGDVANGAV----RAETPMVAVDAPAGVSITSQDTMVLGAAQHIDLVS 733 Query: 700 GSDTSIATGKSLLASVAEKISLFAFKAGIKLFSAKGKVEVQAQSDDLDLIA------EKV 753 ++T ++ G+ LL E +S FA K +KL S KG +++QA + +DL A E Sbjct: 734 RANTQLSAGRRLLMRAGEMLSAFAAKH-MKLISGKGSIKIQAHEEHIDLSAARRILLEAS 792 Query: 754 ARLLSTSGRVEIHAKDEVMISAGGSFIQINASGITQGTAGTWEAKASQHAMTGPA 808 ++ + ++ I +++ ++ GGSF + NAS I GT+G W +A+ H + GPA Sbjct: 793 EEIILQAPKISIRSRETTEVAGGGSFSRWNASAIEHGTSGEWRQQAAMHHVLGPA 847 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,638,331 Number of extensions: 113574 Number of successful extensions: 350 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 290 Number of HSP's successfully gapped: 12 Length of query: 832 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 739 Effective length of database: 1,179,515 Effective search space: 871661585 Effective search space used: 871661585 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)