BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0058.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310686|ref|YP_003774778.1| ribulose-5-phosphate 4-epimeras...   505   e-144

>gi|300310686|ref|YP_003774778.1| ribulose-5-phosphate 4-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score =  505 bits (1300), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/257 (93%), Positives = 248/257 (96%)

Query: 1   MNIMQFSYGADKPSHCSDEEWALRIQLAHCYRLVDYLGWTEMIFNHISVRVPGPEHHYLV 60
           M+IMQ+SYGA +P+HCSDEEWALRIQLAHCYRLVDYLGWTEMIFNHISVRVPGPEHHYLV
Sbjct: 1   MDIMQYSYGAVQPAHCSDEEWALRIQLAHCYRLVDYLGWTEMIFNHISVRVPGPEHHYLV 60

Query: 61  NPFALNYNEVTPANLLKVGLDGQLAEPSDYKANPAGFALHSAIHGARDDLRCVIHTHTTP 120
           NPFALNYNEVTPANLLKVGLDG LAEPSDY+ANPAGFALHSAIHGARDDLRCVIHTHTTP
Sbjct: 61  NPFALNYNEVTPANLLKVGLDGHLAEPSDYQANPAGFALHSAIHGARDDLRCVIHTHTTP 120

Query: 121 ISAVTMKKSGFEHNDFYGAQLFGRIGYHAFEGITLFAEEKERMLQSLGDKHILVLRNHGV 180
           ISAVTMKKSGF HNDFYGAQLFGRIGYH FEGITLFAEEKERMLQSLG+KHILVLRNHGV
Sbjct: 121 ISAVTMKKSGFAHNDFYGAQLFGRIGYHDFEGITLFAEEKERMLQSLGEKHILVLRNHGV 180

Query: 181 AVCESDIQRAFFLLWTVQRAAEIQVAGRSMAGEDQLLPDAVRQKCADLTQQLIRNDGFAV 240
           AVCESDI+RAFFLLWTVQRAAEIQVAGRSM GEDQ+L D VRQKCADLTQQLIRNDGFAV
Sbjct: 181 AVCESDIERAFFLLWTVQRAAEIQVAGRSMGGEDQVLQDDVRQKCADLTQQLIRNDGFAV 240

Query: 241 IFFEAIVRKMLKGGYQV 257
           IFF AIVRKMLKG YQV
Sbjct: 241 IFFAAIVRKMLKGLYQV 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 838,850
Number of extensions: 34022
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)