BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0057.p
         (298 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310685|ref|YP_003774777.1| 2-ketopantoate reductase [Herba...   520   e-149
gi|300310480|ref|YP_003774572.1| 2-dehydropantoate 2-reductase [...    76   4e-15
gi|300311176|ref|YP_003775268.1| 2-dehydropantoate 2-reductase [...    63   4e-11

>gi|300310685|ref|YP_003774777.1| 2-ketopantoate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 353

 Score =  520 bits (1339), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 257/279 (92%), Positives = 267/279 (95%)

Query: 1   LHDLHGTTHARPAASQLPEFGIQDVIFLCAKSQDMSALLPQIAPMVGEETVVIPTNNGVP 60
           LHDLHGT HARPAA   P FG+QDVIFLCAKSQDM+ LLPQ+APMVGE TVVIPTNNGVP
Sbjct: 59  LHDLHGTAHARPAADHRPSFGVQDVIFLCAKSQDMAGLLPQVAPMVGETTVVIPTNNGVP 118

Query: 61  WWYFHREGGRFDGETVKAVDPEGALSNAVALDRLIGSVLFITAEVESPGVIRSVNPHLMV 120
           WWYFHREGGRFDG+TVKAVDPEGAL+ A+ L ++IGSVLFITAEVES GVIRSVNPHLMV
Sbjct: 119 WWYFHREGGRFDGQTVKAVDPEGALAAALPLAQIIGSVLFITAEVESAGVIRSVNPHLMV 178

Query: 121 LGEPSGEMSERLMRVRAAVEAAGIEARATDRIRDKLWTKIIANISTNPLSVITQGTLQQL 180
           LGEPSGEMSERL+RVRAAVE+AGIEARATDRIRDKLWTKIIANISTNPLSVITQGTLQQL
Sbjct: 179 LGEPSGEMSERLLRVRAAVESAGIEARATDRIRDKLWTKIIANISTNPLSVITQGTLQQL 238

Query: 181 YGLPELREVVSQIMRETLLVASSHGARVDIDPLTFLQLGEAMGAFRTSMLQDLERGRPLE 240
           YGLPELREVVSQIMRETLLVASSHGARVDIDPLTFLQLGEAMGAFRTSMLQDLERGRPLE
Sbjct: 239 YGLPELREVVSQIMRETLLVASSHGARVDIDPLTFLQLGEAMGAFRTSMLQDLERGRPLE 298

Query: 241 LAAIGDAVLEMAERYVIPMPITRAIVSLARFRGEAAQQQ 279
           LAAIGDAVLEMAERY IPMPITRAIVSLARFRGEAAQQQ
Sbjct: 299 LAAIGDAVLEMAERYAIPMPITRAIVSLARFRGEAAQQQ 337


>gi|300310480|ref|YP_003774572.1| 2-dehydropantoate 2-reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score = 75.9 bits (185), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 116/255 (45%), Gaps = 32/255 (12%)

Query: 24  DVIFLCAKSQDMSALLPQIAPMVGEETVVIPTNNGVPWWYFHREGGRFDGETVKAVDPEG 83
           D+I L  K     A +  +A + G  T           W    + G  + + +  V P  
Sbjct: 70  DLIILFTKGFHTQAAIASVAHLAGPHT-----------WALSVQNGLGNADLIAEVIPR- 117

Query: 84  ALSNAVALDRLIGSVLFITAEVESPGVIRSVNPHLMVLGEPSGEMSERLMRVRAAVEAAG 143
                   +R+I  +  + A++ +PGV+ S     + +   SG+ S +L +V A   AAG
Sbjct: 118 --------ERIIVGMTNLPADLRAPGVVHSHGEGQVRIWTLSGQPSAQLTQVAADFNAAG 169

Query: 144 IEARATDRIRDKLWTKIIANISTNPLSVITQGTLQQLYGLPELREVVSQIMRETLLVASS 203
           +   A   ++  +W K+  N + N +  +T  T+         RE+  +I  ET+ VA +
Sbjct: 170 LPCSADPLVQQAIWEKLAFNAALNAICAVTGLTVGAAGASASGRELALRIAAETVAVAQA 229

Query: 204 HGARVDIDPLTFLQLGEAM-GAFRT------SMLQDLERGRPLELAAIGDAVLEMAERYV 256
            G    ID    +Q+ +A+  AFRT      SMLQD+E GR  E+  I  AV+  AER  
Sbjct: 230 AG----IDA-RLVQVEDAIEHAFRTHLHHKPSMLQDIEAGRRTEIDFINGAVVREAERLG 284

Query: 257 IPMPITRAIVSLARF 271
           +P+P T+ +  L + 
Sbjct: 285 LPVPTTQTLHQLVKL 299


>gi|300311176|ref|YP_003775268.1| 2-dehydropantoate 2-reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 111/256 (43%), Gaps = 29/256 (11%)

Query: 24  DVIFLCAKSQDMSALLPQIAPMVGEETVVIPTNNGVPWWYFHREGGRFDGETVKAVDPEG 83
           +++  C KS D      Q+AP +  +T+V+   NG                     D   
Sbjct: 69  ELVLFCVKSPDTETAGAQLAPHLAPDTLVLSLQNGT--------------------DNAE 108

Query: 84  ALSNAVALDRLIGSVLFITAEVESPGVIRSVNPHLMVLGEPSGEMSERLMRVRAAVEAAG 143
            L   +A       V   T E+  PG ++      +V+ EP+    +       A+ AAG
Sbjct: 109 RLRTVMAQPVAAAVVYVAT-EMAGPGHVKHHGRGELVI-EPAAGSRD----AADALVAAG 162

Query: 144 IEARATDRIRDKLWTKIIANISTNPLSVITQGTLQQLYGLPELREVVSQIMRETLLVASS 203
           +    +D +R +LW K+I N + N LS I Q    +L   P + EV++Q++ E   VA++
Sbjct: 163 VPTEISDNVRGELWLKLILNCAYNALSAIAQLPYGKLVEGPGIPEVIAQLVTECKAVAAA 222

Query: 204 HGARV--DIDPLTFLQLGEAMGAFRTSMLQDLERGRPLELAAIGDAVLEMAERYVIPMPI 261
            G  +  D+D     ++ + M    +S  QDL RG+P E+  +   ++  A+ + +  P 
Sbjct: 223 EGVTLADDVDS-AVRKIVQTMPGQFSSTAQDLARGKPSEIDHLNGFIVARAQAHGLSAPA 281

Query: 262 TRAIVSLARFRGEAAQ 277
              + +L +     AQ
Sbjct: 282 NLTVHALVKLIESKAQ 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 811,002
Number of extensions: 31721
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 3
Length of query: 298
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,217,395
Effective search space: 259305135
Effective search space used: 259305135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)