BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0054.p (635 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310683|ref|YP_003774775.1| amino acid ABC transporter comp... 1072 0.0 gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC t... 650 0.0 gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC t... 584 e-168 gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC t... 259 5e-70 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 221 2e-58 >gi|300310683|ref|YP_003774775.1| amino acid ABC transporter composite ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 627 Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 571/621 (91%), Positives = 591/621 (95%), Gaps = 3/621 (0%) Query: 17 LSSRAALGLFVVLLAVAPFVLPPFTMTLLNNIGLASLVVLGLVLLTGVAGLTSFGQAAFV 76 LS R ALGLF+VLLA+AP VLPPF MTLLNNIGLASLVVLGLVLLTGVAGLTSFGQAAFV Sbjct: 8 LSPRVALGLFIVLLALAPLVLPPFYMTLLNNIGLASLVVLGLVLLTGVAGLTSFGQAAFV 67 Query: 77 GLGAYFSAALSAKILPLPDALLWMQSPWVALVVALVLTAVLAFAVGSVTLKLSGHYLPLG 136 GLGAYFSAALSAK+LPLP+ALLW+QSPW AL VALVLTA+LAFAVGSVTLKLSGHYLPLG Sbjct: 68 GLGAYFSAALSAKVLPLPEALLWLQSPWPALAVALVLTALLAFAVGSVTLKLSGHYLPLG 127 Query: 137 TIAWGISLYFIFGTLESMGGQTGMSGIPSITFFGIALSSDRAMFGLIWVAVLLGVAALSN 196 TIAWGISLYFIFGTLESMGGQTGMSGIPSI F G+ L SDRAMFGLIWVAVLLGVAAL N Sbjct: 128 TIAWGISLYFIFGTLESMGGQTGMSGIPSIAFLGVVLDSDRAMFGLIWVAVLLGVAALRN 187 Query: 197 LLDSREGRAIRALKGGIVMAEAMGINTARMRIVVFVIAAVLAALSGWLYVHMQRFVNPSP 256 LLDSREGRAIRALKGGIVMAEAMG+NTARMRIVVFVIAAVLAALSGWLYVHMQRFVNPSP Sbjct: 188 LLDSREGRAIRALKGGIVMAEAMGVNTARMRIVVFVIAAVLAALSGWLYVHMQRFVNPSP 247 Query: 257 FGLGFGIDYLFMAVLGGASHVWGAVLGSTLIVVLKEWLQGILPVVLGRSGNFETIVFGLL 316 FGLGFGIDYLFMAVLGGASHVWGAVLGS+LIVVLKEWLQG+LPVVLGRSGNFETIVFGLL Sbjct: 248 FGLGFGIDYLFMAVLGGASHVWGAVLGSSLIVVLKEWLQGLLPVVLGRSGNFETIVFGLL 307 Query: 317 IVVLLQRSRDGLWPYLARLVPVRSRRLEIDPQAEALPRRPMPAPQEVVLDVRDVTRKFGG 376 IVVLLQRSR+G+WPYLARL PVR+RRL ID QAEALPRRPMP PQEVVLDVR VTRKFGG Sbjct: 308 IVVLLQRSREGIWPYLARLAPVRTRRLVIDAQAEALPRRPMPTPQEVVLDVRSVTRKFGG 367 Query: 377 LVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSVQFRGHEVTGRGSRHI 436 LVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSVQFRG EVTGRGSRHI Sbjct: 368 LVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSVQFRGQEVTGRGSRHI 427 Query: 437 AGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLSSMLRLDRQEEARILAEAARQIE 496 AGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVL+SMLRLDR+EEARILAEAARQIE Sbjct: 428 AGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLASMLRLDRKEEARILAEAARQIE 487 Query: 497 RVGLKAQMFEQAGALSLGQQRILEIARALAADPCLLLLDEPAAGLRLGEKQALGDLLRKL 556 RVGLKAQM+E AGALSLGQQRILEIARALAADPCLLLLDEPAAGLRLGEKQAL +LLRKL Sbjct: 488 RVGLKAQMYELAGALSLGQQRILEIARALAADPCLLLLDEPAAGLRLGEKQALAELLRKL 547 Query: 557 RSEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPEEIQNNRAVLEAYLGVADEE-- 614 R EGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLP +IQNN AVLEAYLGVADEE Sbjct: 548 RGEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPADIQNNPAVLEAYLGVADEEAD 607 Query: 615 EGATVEEGAGNAIAAGAHHGQ 635 EGAT + A+AAGAHHGQ Sbjct: 608 EGATAAQ-PDTAMAAGAHHGQ 627 >gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC transporter ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 596 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/605 (57%), Positives = 444/605 (73%), Gaps = 18/605 (2%) Query: 15 ARLSSRAALG--LFVVLLAVAPFVLPPFTMTLLNNIGLASLVVLGLVLLTGVAGLTSFGQ 72 A +S RAAL F ++LA+ LPPF +TLL+ +GL ++V LGLVLLTGVAGL SFGQ Sbjct: 3 AFISHRAALPALFFAIVLALPQLGLPPFWVTLLSYVGLYAIVALGLVLLTGVAGLISFGQ 62 Query: 73 AAFVGLGAYFSAALSAKILPLPDALLWMQSPWVALVVALVLTAVLAFAVGSVTLKLSGHY 132 AAFVG+GAY +A L+ + + SPW+ L+ + LTA AF +GS+T+++SGHY Sbjct: 63 AAFVGMGAYTTAYLTTQ---------FGLSPWIGLLAGIALTACSAFLIGSLTMRISGHY 113 Query: 133 LPLGTIAWGISLYFIFGTLESMGGQTGMSGIPSITFFGIALSSDRAMFGLIWVAVLLGVA 192 LPL TIAWG+SLY++FG LE +G G++GIP IT + + +M+ LIWV ++L + Sbjct: 114 LPLSTIAWGLSLYYLFGNLEMLGKHDGINGIPVITIGSVEFGNGASMYLLIWVVLILALV 173 Query: 193 ALSNLLDSREGRAIRALKGGIVMAEAMGINTARMRIVVFVIAAVLAALSGWLYVHMQRFV 252 ++ N LDSR GRA+RAL+ G VM EAMG++TAR++IV+FV AAVLA +SGWLY H+Q+ V Sbjct: 174 SVVNFLDSRAGRAVRALRFGTVMPEAMGVDTARLKIVIFVYAAVLAGISGWLYAHLQQAV 233 Query: 253 NPSPFGLGFGIDYLFMAVLGGASHVWGAVLGSTLIVVLKEWLQGILPVVLGRSGNFETIV 312 NP+PFGL +GIDYL M V+GGA HV GA+LG+ L+ VL +LQ LP VLG GNFE IV Sbjct: 234 NPTPFGLKYGIDYLLMVVVGGAGHVAGAILGAGLLAVLSNFLQEWLPGVLGTGGNFEAIV 293 Query: 313 FGLLIVVLLQRSRDGLWPYL-ARLVPVRSRRLEIDPQAEALPRRPMPAPQEVVLDVRDVT 371 FG+ +V+ LQ + +GLWP L AR R R L D A L + PA EV+LDV Sbjct: 294 FGIALVIFLQFANEGLWPRLQARFGRRRPRPLPAD--AAPLAQMAKPARGEVILDVEAAR 351 Query: 372 RKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSVQFRGHEVTGR 431 ++FGGLVA NN+S V AGE++ LIGPNGAGKST FN ++GV + +SG + +RG + G Sbjct: 352 KQFGGLVAVNNVSFSVKAGEIVGLIGPNGAGKSTTFNLVTGVLSVSSGKLLYRGQSLAGL 411 Query: 432 GSRHIAGLGMSRSFQHVRLMPRMTVLENVAIGAYLRG----QRGVLSSMLRLDRQEEARI 487 SR I+ G++R+FQHVRL+P M+VLEN A+GA+ RG QRG+L+S+LR +R EEARI Sbjct: 412 SSRDISSRGIARTFQHVRLVPGMSVLENAAMGAFRRGQFAPQRGILASLLRANRSEEARI 471 Query: 488 LAEAARQIERVGLKAQMFEQAGALSLGQQRILEIARALAADPCLLLLDEPAAGLRLGEKQ 547 L+EA RQ+ERVGL + AG+L+LGQQRILEIARAL DP LLLLDEPAAGLRL EK+ Sbjct: 472 LSEARRQLERVGLGDLVDRPAGSLALGQQRILEIARALCCDPALLLLDEPAAGLRLKEKE 531 Query: 548 ALGDLLRKLRSEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPEEIQNNRAVLEAY 607 AL LL KLR EGMA+LLVEHDMDFVM+L D IVVM+FG KIAEG P +IQ + AVLEAY Sbjct: 532 ALAALLDKLRGEGMAVLLVEHDMDFVMQLTDHIVVMEFGAKIAEGTPAQIQVHPAVLEAY 591 Query: 608 LGVAD 612 LG A Sbjct: 592 LGGAQ 596 >gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 597 Score = 584 bits (1506), Expect = e-168, Method: Compositional matrix adjust. Identities = 316/580 (54%), Positives = 423/580 (72%), Gaps = 18/580 (3%) Query: 38 PPFTMTLLNNIGLASLVVLGLVLLTGVAGLTSFGQAAFVGLGAYFSAALSAKILPLPDAL 97 P F + N IGL +LV +GLVLLTG+ G+TSFGQAAFVG+GAY ++ L+ Sbjct: 25 PQFWVIQANYIGLYALVAIGLVLLTGIGGMTSFGQAAFVGMGAYTTSYLTT--------- 75 Query: 98 LWMQSPWVALVVALVLTAVLAFAVGSVTLKLSGHYLPLGTIAWGISLYFIFGTLESMGGQ 157 + SPW+ L V L +T V A+ +G +TL++SGHYLPL TIAWGISLYF+FG ++ +G Sbjct: 76 VHGVSPWLTLPVGLFITGVSAYVLGRITLRMSGHYLPLATIAWGISLYFLFGKVDFLGKY 135 Query: 158 TGMSGIPSITFFGIALSSDRAMFGLIWVAVLLGVAALSNLLDSREGRAIRALKGGIVMAE 217 G+SGIP++ G+ L+ +R ++ LIW VL NLLDSR GRAIRALKGG MAE Sbjct: 136 DGISGIPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDSRAGRAIRALKGGRSMAE 195 Query: 218 AMGINTARMRIVVFVIAAVLAALSGWLYVHMQRFVNPSPFGLGFGIDYLFMAVLGGASHV 277 AMG++T R +I++FV AA+LA++SGWL+ HMQR VNPSPF L GI+YLF+ V+GG +H+ Sbjct: 196 AMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLAMGIEYLFIVVVGGIAHI 255 Query: 278 WGAVLGSTLIVVLKEWLQGILPVVLGRSGNFETIVFGLLIVVLLQRSRDGLWPYLA---- 333 WGA+LG+ ++ +L + LQ +LP +LG G++E+IVFGL++++LL+ + GLWP++ Sbjct: 256 WGALLGAGVLKLLSDQLQVLLPALLGDGGSYESIVFGLILILLLKYAGGGLWPWVRALWL 315 Query: 334 RLVPVRSRRLEIDPQAEALPRRPMPAPQEVVLDVRDVTRKFGGLVANNNMSLKVMAGEVL 393 R P L + A A+ +R A +L+V + ++FGGLVA N++S KV AGE++ Sbjct: 316 RAFPTAPAPLRV-AHATAMDKRAAVARGAPLLEVDQINKRFGGLVAVNDVSFKVKAGEIV 374 Query: 394 ALIGPNGAGKSTLFNQISGVDTPTSGSVQFRGHEVTGRGSRHIAGLGMSRSFQHVRLMPR 453 LIGPNGAGKST FN ++G+ + G V F G ++ G +R IA LG++R+FQHVRL+P Sbjct: 375 GLIGPNGAGKSTTFNLVTGLLHASGGRVGFNGRDIAGLPARAIARLGIARTFQHVRLLPG 434 Query: 454 MTVLENVAIGAYLRGQRGVL----SSMLRLDRQEEARILAEAARQIERVGLKAQMFEQAG 509 MTVLENVA+GA++R Q+G L ++ML L+R EE +L EAAR + RVGL+ M EQAG Sbjct: 435 MTVLENVALGAHMRSQQGFLKNTVNAMLHLERAEEQALLDEAARALHRVGLQHLMHEQAG 494 Query: 510 ALSLGQQRILEIARALAADPCLLLLDEPAAGLRLGEKQALGDLLRKLRSEGMAILLVEHD 569 L+LGQQRILEIARAL DP LLLLDEPAAGLR EKQAL +L++LR++GM+ILLVEHD Sbjct: 495 NLALGQQRILEIARALCCDPLLLLLDEPAAGLRHLEKQALSKVLQELRADGMSILLVEHD 554 Query: 570 MDFVMELVDRIVVMDFGQKIAEGLPEEIQNNRAVLEAYLG 609 M+FVMEL D IVVM+FG KIAEG P+EI + AV+EAYLG Sbjct: 555 MEFVMELTDHIVVMEFGAKIAEGTPQEIARHPAVIEAYLG 594 >gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 655 Score = 259 bits (662), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 198/656 (30%), Positives = 328/656 (50%), Gaps = 72/656 (10%) Query: 27 VVLLAVAPFVL-PPFTMTLLNNIGLASLVVLGLVLLTGVAGLTSFGQAAFVGLGAYFSAA 85 +V LA P V+ P+ + L+ I + ++++ GL ++ G G S G A G+G+Y + Sbjct: 13 IVALAGIPMVVHNPYYLHLIETILIYAILLFGLDIVVGYTGQVSLGHAGLFGIGSYAAGV 72 Query: 86 LSAKI-LPLPDALLWMQSPWVALVVALVLTAVLAFAVGSVTLKLSGHYLPLGTIAWGISL 144 L K+ +P+ +V + A+ +TAV + L+++G YL + T+A+G + Sbjct: 73 LFFKLGMPI----------FVTVPAAIAVTAVFGAILALPALRVTGPYLAMVTLAFGTII 122 Query: 145 YFIFGTLESMGGQTGMSGIP-SITFFGIALSSDRAMFGLIWVAVLLGVAALSNLLDSREG 203 + + + G GI G S+ F L+ V ++L + + +L S G Sbjct: 123 QILINEMTFL--TEGPLGIKLQKPMIGGDKMSEVQFFYLVAVLMVLSMLVVHRILKSNLG 180 Query: 204 RAIRALKGGIVMAEAMGINTARMRIVVFVIAAVLAALSGWLYVHMQRFVNPSPFGLGFGI 263 RA +AL+ + ++ MG++ R ++ F+I+A LA LSG LY + + +++P+ + I Sbjct: 181 RAFQALRDSPIASDCMGVSVYRYKVYAFIISAALAGLSGALYAYSEEYISPNTYNFELTI 240 Query: 264 DYLFMAVLGGASHVWGAVLGSTLIVVLKEWLQGI-------------------------- 297 +L ++GG G+++G+ ++V+L L I Sbjct: 241 MFLLAVIMGGRKSRIGSLIGALIVVMLPSLLSDIALFRQIATVLAVIVVVGAGVQVARKT 300 Query: 298 -------LPVV-----------LGRSGNFETIVFGLLIVVLLQRSRDGLWPY-------- 331 +PVV L ++ +FGL+ + ++ +DG+ + Sbjct: 301 KTVRGVIVPVVATIAMAAFSYKLENITDWRLTIFGLMTLFVVYYLQDGIVGFCRTLFGRV 360 Query: 332 LARLVPVRSRRLEIDPQAEALPRRPMPAPQEVVLDVRDVTRKFGGLVANNNMSLKVMAGE 391 L + VPV ++++ D + + + +L V + +FGGL A N + L V G Sbjct: 361 LTKHVPV-AQQIAGDKERAVITTDSVKDAGATLLKVNQILMQFGGLKALNRVDLDVRKGT 419 Query: 392 VLALIGPNGAGKSTLFNQISGVDTPTSGSVQFRGHEVTGRGSRHIAGLGMSRSFQHVRLM 451 V LIGPNG+GKST+ N ++G+ PT G V++ G ++G IA G++R+FQ+V+L Sbjct: 420 VHGLIGPNGSGKSTMMNVLTGIYRPTDGVVEYDGRPISGNVPSAIALGGVARTFQNVQLF 479 Query: 452 PRMTVLENVAIGAYLRGQRGVLSSMLRLDRQEEARILAEAARQ--IERVGLKAQMFEQAG 509 MT ENV +G + V+ M R A +E VGL E+A Sbjct: 480 GEMTATENVLVGLHHTFNSNVVDVMANTPRYVREEQAARERAAAILEFVGLANLANEEAR 539 Query: 510 ALSLGQQRILEIARALAADPCLLLLDEPAAGLRLGEKQALGDLLRKLRSEGMAILLVEHD 569 L G+QR+LEI RAL +P LLLLDEPAAGL + + L ++RK+R G+ I+L+EH Sbjct: 540 NLPYGKQRLLEIGRALGLNPSLLLLDEPAAGLTAPDIKELVAIIRKIREAGITIILIEHH 599 Query: 570 MDFVMELVDRIVVMDFGQKIAEGLPEEIQNNRAVLEAYL--GVADEEEGATVEEGA 623 MD VM + D + V+DFGQKIAEG P ++Q + V+EAYL G D + + GA Sbjct: 600 MDVVMSICDTVTVLDFGQKIAEGKPAQVQADPKVIEAYLGSGAGDAHDNTSSPAGA 655 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/250 (45%), Positives = 167/250 (66%), Gaps = 2/250 (0%) Query: 362 EVVLDVRDVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSV 421 + +L +RDV+++FGGL A N + + + G++ LIGPNGAGK+T FN I+G+ P +G+ Sbjct: 3 QTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTF 62 Query: 422 QFRGHEVTGRGSRHIAGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLSSMLRLD- 480 + G + +A G++R+FQ++RL MTVLENV +G ++R ++ V ++ R Sbjct: 63 ELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKA 122 Query: 481 -RQEEARILAEAARQIERVGLKAQMFEQAGALSLGQQRILEIARALAADPCLLLLDEPAA 539 R+EEA I ++ + ++ VG+ A LS G QR LEIARALA DP LL LDEPAA Sbjct: 123 AREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAA 182 Query: 540 GLRLGEKQALGDLLRKLRSEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPEEIQN 599 G+ EK L +LL K+++EG ILL+EHD+ +M L +RI V+D+G+ IAEG+P ++Q Sbjct: 183 GMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQK 242 Query: 600 NRAVLEAYLG 609 N AV+EAYLG Sbjct: 243 NPAVIEAYLG 252 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,665,919 Number of extensions: 70254 Number of successful extensions: 811 Number of sequences better than 1.0e-08: 152 Number of HSP's gapped: 568 Number of HSP's successfully gapped: 169 Length of query: 635 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 544 Effective length of database: 1,188,985 Effective search space: 646807840 Effective search space used: 646807840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 134 (56.2 bits)