BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0052.p (391 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310681|ref|YP_003774773.1| amino acid ABC transporter peri... 710 0.0 gi|300313408|ref|YP_003777500.1| branched-chain amino acid ABC t... 334 9e-93 gi|300313298|ref|YP_003777390.1| branched-chain amino acid ABC t... 285 4e-78 gi|300312236|ref|YP_003776328.1| amino acid ABC transporter peri... 83 4e-17 gi|300311113|ref|YP_003775205.1| branched-chain amino acid ABC t... 69 5e-13 >gi|300310681|ref|YP_003774773.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/390 (90%), Positives = 370/390 (94%), Gaps = 6/390 (1%) Query: 1 MLHKRLIATAATAVLAAAGTLASVAGNPAFAQVKIGVVTSSTGPVSLVGIPQKNTVPLLP 60 MLHKRLIA A +L ++S+A +PA AQVK+GVVTSSTGPVSLVGIPQKNTVPLLP Sbjct: 1 MLHKRLIA--AVVLLG----MSSLAMHPALAQVKVGVVTSSTGPVSLVGIPQKNTVPLLP 54 Query: 61 AKAGDLKIEYISLDDASDPTKSVTEVKKLIAEYNVDAIIGPSGSPNAMGVISFAAEAGVP 120 K GDLK+EYISLDDASDPTKSVTE+KKLIAE+NVDAIIGPSGSPNAMGVISF AEAGVP Sbjct: 55 TKIGDLKVEYISLDDASDPTKSVTEIKKLIAEHNVDAIIGPSGSPNAMGVISFVAEAGVP 114 Query: 121 MLAPVGTAAVVLPMTEQKKWVFKTTQNDDLIASALVAQMVKTKVKTAGFIAVNDPFGENW 180 +LAPVGTAAVVLPMTEQKKWVFKTTQNDDLIA ALV QMVKTKVKTAGFIAVNDPFGENW Sbjct: 115 LLAPVGTAAVVLPMTEQKKWVFKTTQNDDLIAKALVDQMVKTKVKTAGFIAVNDPFGENW 174 Query: 181 AKVFTELAAKNNIKIVANERYQRTDTSVTAQTLKIVAANPDAVLVAAPGAATVLPQTTLF 240 A+VF++LAAKNNIKIVANERYQRTDTSVTAQ+LKIVAANPDAVLVAAPGAATVLPQTTLF Sbjct: 175 ARVFSDLAAKNNIKIVANERYQRTDTSVTAQSLKIVAANPDAVLVAAPGAATVLPQTTLF 234 Query: 241 DQGYKGKIYQTHGAALPAFLQLGKNKVEGTILAASLMLVLPEIPDSNPSKKVATEYIEAY 300 DQGYKGKIYQTHGAALPAFLQLGKNKVEGTILAASLMLVLPEIPDSNPSKKVAT+YIEAY Sbjct: 235 DQGYKGKIYQTHGAALPAFLQLGKNKVEGTILAASLMLVLPEIPDSNPSKKVATDYIEAY 294 Query: 301 KKMYNTVPATFGANVYDAGLLLEKAIPVAAKKAKPGSKEFRAALRDALESTKEVVGTQGV 360 KKMYN VPATFGANVYDAGLLLEKAIPVAA+KAKPGSKEFRAALRDALE+TKEVVGTQGV Sbjct: 295 KKMYNAVPATFGANVYDAGLLLEKAIPVAARKAKPGSKEFRAALRDALENTKEVVGTQGV 354 Query: 361 YNMSPADHSGFDERGRELITVKGGNWTLLK 390 YNMS DHSGFD+RGRELITVKGGNW LLK Sbjct: 355 YNMSATDHSGFDDRGRELITVKGGNWALLK 384 >gi|300313408|ref|YP_003777500.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 381 Score = 334 bits (856), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 166/357 (46%), Positives = 234/357 (65%), Gaps = 1/357 (0%) Query: 31 AQVKIGVVTSSTGPVSLVGIPQKNTVPLLPAKAGDLKIEYISLDDASDPTKSVTEVKKLI 90 A + +GV S+TGP + +GIP+KNT+ LLP K+ YI LDDASD T++V ++ + Sbjct: 21 ADINVGVTVSTTGPAASLGIPEKNTIALLPTTIAGHKVNYIILDDASDTTQAVKNARRFV 80 Query: 91 AEYNVDAIIGPSGSPNAMGVISFAAEAGVPMLAPVGTAAVVLPMTEQKKWVFKTTQNDDL 150 +E NVD I+G S SPN++ +I AA+A PM++ A +V PM +KKWVFKT QND + Sbjct: 81 SENNVDVIVGSSVSPNSISMIEVAADAQTPMISLAAAARIVEPMDAKKKWVFKTPQNDIM 140 Query: 151 IASALVAQMVKTKVKTAGFIAVNDPFGENWAKVFTELAAKNNIKIVANERYQRTDTSVTA 210 ++ A+ MV + FI ++ +GE W + F + A +++VANER+ TD+S TA Sbjct: 141 MSLAIARDMVARGYQRIAFIGYSNAYGEGWYEEFKKAAGLKKLELVANERFAPTDSSTTA 200 Query: 211 QTLKIVAANPDAVLVAAPGAATVLPQTTLFDQGYKGKIYQTHGAALPAFLQLGKNKVEGT 270 Q LK+VAA PDA+L+AA G V+PQ L ++G+KG+IYQTHG A FL++G ++GT Sbjct: 201 QALKLVAAKPDAILIAASGTPAVVPQRALKERGFKGQIYQTHGVANADFLRVGGKMLDGT 260 Query: 271 ILAASLMLVLPEIPDSNPSKKVATEYIEAYKKMYNTVPAT-FGANVYDAGLLLEKAIPVA 329 +L A +LV ++P SNP +KVA +Y Y+ ++ + FG +DAG+LL AIPVA Sbjct: 261 LLPAGPVLVAAQLPASNPIRKVALDYTTKYEAVHGKDSVSLFGGYAWDAGVLLRWAIPVA 320 Query: 330 AKKAKPGSKEFRAALRDALESTKEVVGTQGVYNMSPADHSGFDERGRELITVKGGNW 386 K AKPG+ EFRAALRD LE+TKEV G GVY MS DH G D+R ++ + G W Sbjct: 321 LKGAKPGTPEFRAALRDVLEATKEVTGVHGVYTMSSTDHLGLDQRAAVMVKIVDGAW 377 >gi|300313298|ref|YP_003777390.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 381 Score = 285 bits (729), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 159/382 (41%), Positives = 224/382 (58%), Gaps = 17/382 (4%) Query: 13 AVLAAAGTLASVAGNPAFAQVKIGVVTSSTGPVSLVGIPQKNTVPLLPAKAGDLKIEYIS 72 A+LA AG A A++ IGVV S TGP S +GIP KN L P K++ I Sbjct: 14 AMLACAGI--------AHAELTIGVVMSLTGPGSGLGIPAKNGFALWPETIAGEKVKMII 65 Query: 73 LDDASDPTKSVTEVKKLIAEYNVDAIIGPSGSPNAMGVISFAAEAGVPMLA--PVGTAAV 130 LDDA+DPT++ ++L+AE VD IIG + P + + A E LA P+ TA Sbjct: 66 LDDATDPTQASKNARRLVAEDKVDLIIGSAAVPPTLAIADVALETQTVQLAISPIETA-- 123 Query: 131 VLPMTEQKKWVFKTTQNDDLIASALVAQMVKTKVKTAGFIAVNDPFGENWAKVFTELAAK 190 + W F+ Q+ ++A +V QM K VKT GF+ +D +GENW K LA Sbjct: 124 ----EGKDAWTFRLPQSTAVMAGGVVNQMKKLGVKTIGFLGYSDSYGENWLKEVQRLATA 179 Query: 191 NNIKIVANERYQRTDTSVTAQTLKIVAANPDAVLVAAPGAATVLPQTTLFDQGYKGKIYQ 250 +K+ ER+ R DTSVTAQ L++V++NPDAVLV A G+ +P L ++GYKGKI+Q Sbjct: 180 AGMKMGTVERFSRADTSVTAQALRVVSSNPDAVLVVASGSGAAMPHKALIERGYKGKIFQ 239 Query: 251 THGAALPAFLQLGKNKVEGTILAASLMLVLPEIPDSNPSKKVATEYIEAYKKMYNTVPAT 310 TH AA ++LG VEG + + +V +PDSN SKK+A +++ Y+K + Sbjct: 240 THSAASRDLIRLGGKDVEGAYVISGPAVVPEALPDSNASKKLAMDFVTRYEKQFGAGSRN 299 Query: 311 -FGANVYDAGLLLEKAIPVAAKKAKPGSKEFRAALRDALESTKEVVGTQGVYNMSPADHS 369 F A+ YDA L+L+K +P A KKAKPG+ FRAAL++ALE++ + TQG N SP DH Sbjct: 300 LFAAHTYDAQLVLQKVVPEALKKAKPGTPAFRAALKEALETSGPIQITQGTLNYSPKDHF 359 Query: 370 GFDERGRELITVKGGNWTLLKP 391 G + R ++T++ GNW + P Sbjct: 360 GLGDDARIMLTIQNGNWKAVNP 381 >gi|300312236|ref|YP_003776328.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 102/383 (26%), Positives = 164/383 (42%), Gaps = 46/383 (12%) Query: 31 AQVKIGVVTSSTGPVSLVGIPQKNTVPL----LPAKAG--DLKIEYISLDDASDPTKSVT 84 A +K+GV + TGP + G+ KN L + AK G K+ + D+ +++ Sbjct: 26 ADIKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGDKLALVIEDEQGKKEEAIN 85 Query: 85 EVKKLIAEYNVDAIIGPSGSPNAMGVISFAAEAGVPMLAPVGTAAVVLPMTEQKKWVFKT 144 KKLI + V A+ GP+ S +A A A V + GT+ +T + F+ Sbjct: 86 VFKKLIFQDKVLAVFGPTLSNSAFAADPIANAAKVVVF---GTSNTADGITAMGPFTFRN 142 Query: 145 TQNDDLIASALVAQMVKTKVKTAGFIAV------NDPFGENWAKVFTELAAKNNIKIVAN 198 + ++ + ++ VK VK G V +D F ++ VF I + Sbjct: 143 S----VMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYDVFKATLEHQKIPVTTT 198 Query: 199 ERYQRTDTSVTAQTLKIVAANPDAVLVA--APGAATVLPQTTLFDQGYKGKIYQTHGAAL 256 E Y + D AQ KI A NPDA++ + A AA ++ QT G K +G Sbjct: 199 EAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRAL--GMKQPFIGGNGLNS 256 Query: 257 PAFLQLGKNKVEGTILAASLMLVLPEIPDSNPSKKVATEYIEAYKKMYNTVPATFGANVY 316 P ++ K+ + T++ + + P+ K +I AYK + P F A Y Sbjct: 257 PKLFEIAKDAGDNTLMGSPW-----SAENQTPANKA---FITAYKAKFGADPDQFAAQAY 308 Query: 317 DAGLLLEKA---IPVAAKKAKPGSKEFRAALRDALESTKEVVGTQG--VYNMSPA---DH 368 DA ++ A + ++ AK R ALR AL + K + G G + +PA Sbjct: 309 DAMYIVADALKNVKLSGNLAKD-----RDALRAALPAVK-IDGATGKFAFRAAPAVAGKQ 362 Query: 369 SGFDERGRELITV-KGGNWTLLK 390 GFD ++ + KGG + LLK Sbjct: 363 VGFDADQEAIVNIAKGGKFVLLK 385 >gi|300311113|ref|YP_003775205.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 383 Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 100/362 (27%), Positives = 159/362 (43%), Gaps = 29/362 (8%) Query: 8 ATAATAVLAAAGTLASVAGNPAFAQVKIGVVTSSTGPVSLVGIPQKNTVPLLPAK---AG 64 A A A+++ A L S A +P +KIGV TG + +G+ ++ V L A+ AG Sbjct: 7 AFVAAALMSLA--LTSQAADP----IKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAG 60 Query: 65 DL---KIEYISLDDASDPTKSVTEVKKLIAEYNVDAIIGPSGSPNAMGVISFAAEAGVPM 121 L +I+ I DD + + V ++LI + V A +G + A+ F EA +P+ Sbjct: 61 GLLGRQIQLIERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPV 120 Query: 122 LAPVGTAAVVLPMTEQKK--WVFKTTQNDDLIASALVAQMV-KTKVKTAGFIAVNDPFGE 178 + V T V+ E++K +VF+T+ D + A + + V K K +A + +G+ Sbjct: 121 INNVATGTVITKQFEKEKDNYVFRTSAADKIQAKMIADEAVDKQKFTKVAILADSTNYGQ 180 Query: 179 NWAKVFTELAAKNNIKIVANERYQRTDTSVTAQTLKIVAANPDAVLVAAPGAATVLPQTT 238 + ++ A + VA E+Y D +TAQ LK AVL G Sbjct: 181 LGREDLEKVLADKKVTPVAVEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANG 240 Query: 239 LFDQGYKGKIYQTHGAALPAFLQLGKNKVEGTILAASLMLVLPEIPDSNPSKKVATEYIE 298 + + I + ++ F+ G + + I D N K+ A +IE Sbjct: 241 MEKLNWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTF------IQDGNTPKRKA--FIE 292 Query: 299 AYKKMY--NTVP-ATFGANVYDAGLLLEKAIPVAAKKAKPGSKEFRAALRDALESTKEVV 355 AY+K Y + +P A A YD+ LLL AI A G K RAAL + + VV Sbjct: 293 AYQKAYKVDRMPSAVSAAQGYDSILLLAAAIKQAG--TTDGDK-VRAALENLNTKVEGVV 349 Query: 356 GT 357 T Sbjct: 350 TT 351 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.129 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,110,169 Number of extensions: 43127 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 8 Length of query: 391 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 304 Effective length of database: 1,207,925 Effective search space: 367209200 Effective search space used: 367209200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)