BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0039.p (515 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 868 0.0 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 505 e-144 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 468 e-133 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 431 e-121 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 377 e-105 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/515 (89%), Positives = 487/515 (94%) Query: 1 MIKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAQQTQQMMDVPLKTERLVSQWNTL 60 MIK+IRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVA QTQQMMDVPLKTERLVSQWNTL Sbjct: 1 MIKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTL 60 Query: 61 LLIAIQRTTTVVKSRDPELEAFLAKEAAASSKESAQTLKDVEQLLTSEEEKKLFAAINAA 120 LLIAIQRTTTVVKS DPELEAFLAKEAAASSKESAQTLKDVEQLL SEEEKK+FAAIN A Sbjct: 61 LLIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVA 120 Query: 121 RKQFLAIRDQIYAAKKEGDAAKVDQLYQQQYVGIANNTQGAMRSLLDFERARIDEISADI 180 RKQFL IRDQIYAAKK+GDAA+V++LYQ+QYVGIA +TQ AMR+LLDFERARID+ISA I Sbjct: 121 RKQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQI 180 Query: 181 QKDAASSQWQIFALEAVILACGIAFALLLTRSITRPVHAALAISQRVAAGDLTSRAQPMG 240 Q+DA+SSQ QI LE VIL CGIAFA+LLTRSITRPVH ALAISQRVAAGDLTSRAQ MG Sbjct: 181 QQDASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQAMG 240 Query: 241 QDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEET 300 +DELGQLVASLQGMSERLHGVVSTVR GADSIA+ASGEIANGNLDLSARTEEQAGALE+T Sbjct: 241 RDELGQLVASLQGMSERLHGVVSTVRHGADSIAMASGEIANGNLDLSARTEEQAGALEQT 300 Query: 301 AASIEQLTSSVRTNSENAHQANDLVKSAASIAGQGGQVMQELIDTMGNINSSSRKIVDII 360 AASIE+LTSSVRTNS+NAHQAN+LV +AAS+AGQGG VM +LI TM IN SSRKIVDII Sbjct: 301 AASIEELTSSVRTNSDNAHQANELVSTAASVAGQGGAVMDQLISTMATINDSSRKIVDII 360 Query: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSASAAKEIKQLIDDSV 420 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSA+AAKEIKQLIDDSV Sbjct: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSV 420 Query: 421 SKVDAGSELVERAGKTMQEVVGSVQGAHALVGDISTASREQAEGIHQVNQAVSQMDGVTQ 480 KV AGS LVE+AGKTMQEVVGSVQGAH LVG+ISTASR+QAEGIHQVNQAV QMDGVTQ Sbjct: 421 GKVSAGSTLVEQAGKTMQEVVGSVQGAHTLVGEISTASRQQAEGIHQVNQAVGQMDGVTQ 480 Query: 481 QNAALVEQAAAAAKSLEDQAAQLKRAVAFFALQAA 515 QNAALVEQAAAAAKSLEDQAAQLKRAVAFF+LQAA Sbjct: 481 QNAALVEQAAAAAKSLEDQAAQLKRAVAFFSLQAA 515 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 505 bits (1301), Expect = e-144, Method: Compositional matrix adjust. Identities = 288/512 (56%), Positives = 372/512 (72%) Query: 1 MIKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAQQTQQMMDVPLKTERLVSQWNTL 60 +I N+ IG RL GFA++L FS+++A +G+WRL VAQ T++MM PLKTERL++ W T Sbjct: 3 IIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTN 62 Query: 61 LLIAIQRTTTVVKSRDPELEAFLAKEAAASSKESAQTLKDVEQLLTSEEEKKLFAAINAA 120 L+ I+RT + KS DP L + A E AASSK S + K VE LL++ EEK LF I Sbjct: 63 LVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGEL 122 Query: 121 RKQFLAIRDQIYAAKKEGDAAKVDQLYQQQYVGIANNTQGAMRSLLDFERARIDEISADI 180 RK +L+ RD+I AK G+ + ++ Q +V A Q MR L+DF+R +D+ + +I Sbjct: 123 RKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREI 182 Query: 181 QKDAASSQWQIFALEAVILACGIAFALLLTRSITRPVHAALAISQRVAAGDLTSRAQPMG 240 AA S+ I LE +IL GI FA LT IT+P+H A+ +S+ VA GDL+S Sbjct: 183 DAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTS 242 Query: 241 QDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEET 300 +DE GQL+ SL+ M++ L G+VS VR G D+I+ AS EIA GNLDLS+RTE+QA +L ET Sbjct: 243 RDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLAET 302 Query: 301 AASIEQLTSSVRTNSENAHQANDLVKSAASIAGQGGQVMQELIDTMGNINSSSRKIVDII 360 A+++E+L S+VR N++NA QA+ L SA+++A QGG V+ +++DTMG IN+SSRKIVDII Sbjct: 303 ASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVDII 362 Query: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSASAAKEIKQLIDDSV 420 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSASAAKEIK+LI+DSV Sbjct: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDSV 422 Query: 421 SKVDAGSELVERAGKTMQEVVGSVQGAHALVGDISTASREQAEGIHQVNQAVSQMDGVTQ 480 KVD GS LVE+AG TMQEVV SV+ +V +IS AS EQ GI Q+N A++QMD VTQ Sbjct: 423 GKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQ 482 Query: 481 QNAALVEQAAAAAKSLEDQAAQLKRAVAFFAL 512 QNAALVE+AAAAA S++ QA +L + V+ F L Sbjct: 483 QNAALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 468 bits (1205), Expect = e-133, Method: Compositional matrix adjust. Identities = 269/512 (52%), Positives = 357/512 (69%) Query: 2 IKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAQQTQQMMDVPLKTERLVSQWNTLL 61 +KN++IG RL GF +L+ V+ A+G+WRL ++ T M + LK ER QW+ + Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 62 LIAIQRTTTVVKSRDPELEAFLAKEAAASSKESAQTLKDVEQLLTSEEEKKLFAAINAAR 121 RT V+KS D +A+ K+ A S +Q K+VE +T EEK+LF + R Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 122 KQFLAIRDQIYAAKKEGDAAKVDQLYQQQYVGIANNTQGAMRSLLDFERARIDEISADIQ 181 + A R I+ K GD A+ ++ V + ++ + DF++ ID+ +A I Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 182 KDAASSQWQIFALEAVILACGIAFALLLTRSITRPVHAALAISQRVAAGDLTSRAQPMGQ 241 +D S + + AL A+ + G A A LLTRSITRP++ A+ I++ VAAGDLTSR + Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSR 240 Query: 242 DELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEETA 301 DE G+L+A+L+ M+ L +V VR+G ++I AS EIA GNLDLSARTE QAG+LEETA Sbjct: 241 DETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETA 300 Query: 302 ASIEQLTSSVRTNSENAHQANDLVKSAASIAGQGGQVMQELIDTMGNINSSSRKIVDIIG 361 +++EQLTS+V+ N++NA QAN+L SA+ +A QGG V+ +++ TMG I++SS+KI DIIG Sbjct: 301 SAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIG 360 Query: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSASAAKEIKQLIDDSVS 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIKQLIDDSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVE 420 Query: 422 KVDAGSELVERAGKTMQEVVGSVQGAHALVGDISTASREQAEGIHQVNQAVSQMDGVTQQ 481 KVD GS LV RAG TMQEVV SV A+V +I+ AS+EQ++GI QVN A++ +D TQQ Sbjct: 421 KVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQ 480 Query: 482 NAALVEQAAAAAKSLEDQAAQLKRAVAFFALQ 513 NAALVEQAAAAA+S++DQAA L AV+ F L+ Sbjct: 481 NAALVEQAAAAARSMQDQAASLTDAVSVFRLE 512 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust. Identities = 257/482 (53%), Positives = 330/482 (68%), Gaps = 3/482 (0%) Query: 4 NIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAQQTQQMMDVPLKTERLVSQWNTLLLI 63 N++IG RL GFAV+L + VV A+ IWRL+ +A T +MM PL ERLVS W + Sbjct: 6 NMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWYRTIHT 65 Query: 64 AIQRTTTVVKSRDPELEAFLAKEAAASSKESAQTLKDVEQLLTSEEEKKLFAAINAARKQ 123 +++RTT + KS DP L AF A +AAA+S+ S + K +E L+ S++EK +F + RK Sbjct: 66 SVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLGEVRKD 125 Query: 124 FLAIRDQIYAAKKEGDAAKVDQLYQQQYVGIANNTQGAMRSLLDFERARIDEISADIQKD 183 ++ RD I AK EG + Q+ + ++ LL +RA ID+++A IQ Sbjct: 126 YIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAAHIQTV 185 Query: 184 AASSQWQIFALEAVILACGIAFALLLTRSITRPVHAALAISQRVAAGDLTSRAQPM---G 240 S+ + AL + + G FA L ITRP+ A+ +++ VAAGDLT R Sbjct: 186 YRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDERLAAR 245 Query: 241 QDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEET 300 DE G+L+ +L M+ L +V VR G D+IA AS EIA GNLDLSARTE QAGALEET Sbjct: 246 GDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQAGALEET 305 Query: 301 AASIEQLTSSVRTNSENAHQANDLVKSAASIAGQGGQVMQELIDTMGNINSSSRKIVDII 360 A+++E+LTS+V N++NA QAN L SA+S+A QGG+V+ ++I TMG+IN SSRKIVDII Sbjct: 306 ASAMEELTSTVSQNADNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRKIVDII 365 Query: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSASAAKEIKQLIDDSV 420 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIK LIDDSV Sbjct: 366 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKALIDDSV 425 Query: 421 SKVDAGSELVERAGKTMQEVVGSVQGAHALVGDISTASREQAEGIHQVNQAVSQMDGVTQ 480 +KV +GSELV RAG TM EVV SV+ +V +IS AS EQ++GI QVN A++ MD TQ Sbjct: 426 AKVGSGSELVTRAGSTMDEVVASVRQVADIVSEISAASSEQSDGISQVNLAITDMDQTTQ 485 Query: 481 QN 482 QN Sbjct: 486 QN 487 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust. Identities = 245/526 (46%), Positives = 349/526 (66%), Gaps = 32/526 (6%) Query: 4 NIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAQQTQQMMDVPLKTERLVSQWNTLLLI 63 ++RI +L F VV+ VAA+G++ ++ Q+ V + + + W + Sbjct: 6 DLRISRKLITTFLVVVAM---VAALGVFSIR-------QLDQVNSASTEISTNWLPSIRT 55 Query: 64 AIQRTTTVVKSRDPELEAFLAKEAAASSKESAQTLKDVEQLLTSE----------EEKKL 113 + + + R EL+ LAK+A + + L T++ EEK + Sbjct: 56 LARLQLAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAI 115 Query: 114 FAAINAARKQFLAIRDQIYAAKKEGDAAKVDQLYQQQYVGIANNTQGAMRSLLDFER-AR 172 + + F++ D+I A ++G + L + +T+ SL ++ A Sbjct: 116 YPEVEKLIATFVSEHDKIIALSRQGKDEEARNLQR------GESTKAYRTSLQQIDKLAA 169 Query: 173 IDEISADI---QKDAASSQWQIFALEAVILACGIA--FALLLTRSITRPVHAALAISQRV 227 +++ ADI Q DA +Q +++ + V G+A A+ ++R I RP+ A++++QRV Sbjct: 170 VNDKGADISNKQADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRV 229 Query: 228 AAGDLTSRAQPMGQDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLS 287 A GDLT+R +P G+DE GQL+ +L+ M++ L G+V VR+G +I AS EIA+GNLDLS Sbjct: 230 AGGDLTTRIEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLS 289 Query: 288 ARTEEQAGALEETAASIEQLTSSVRTNSENAHQANDLVKSAASIAGQGGQVMQELIDTMG 347 +RTEEQA +LEETA+++E+LTS+V+ N++NA QAN L SA+ +A QGG V+ +++DTMG Sbjct: 290 SRTEEQASSLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMG 349 Query: 348 NINSSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAS 407 +IN+SSRKI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA Sbjct: 350 SINASSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAG 409 Query: 408 AAKEIKQLIDDSVSKVDAGSELVERAGKTMQEVVGSVQGAHALVGDISTASREQAEGIHQ 467 AAKEIK+LI+ SV++VD GS+LVERAG TM EVV SV+ +VG+IS+AS+EQ+EGI Q Sbjct: 410 AAKEIKELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQ 469 Query: 468 VNQAVSQMDGVTQQNAALVEQAAAAAKSLEDQAAQLKRAVAFFALQ 513 VN A++QMD VTQQNAALVE+AAAAA+SL++QA L + V FF L+ Sbjct: 470 VNLAIAQMDEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLE 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.126 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,087,205 Number of extensions: 37077 Number of successful extensions: 620 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 347 Number of HSP's successfully gapped: 71 Length of query: 515 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 426 Effective length of database: 1,198,455 Effective search space: 510541830 Effective search space used: 510541830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)