BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0038.p
         (201 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310667|ref|YP_003774759.1| MobA-related protein [Herbaspir...   248   2e-67

>gi|300310667|ref|YP_003774759.1| MobA-related protein
           [Herbaspirillum seropedicae SmR1]
          Length = 205

 Score =  248 bits (633), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 138/193 (71%), Positives = 155/193 (80%)

Query: 5   SPPIALLLAAGRGSRFGAHEEKLLQPFVHHDGRPGIVATATAAALLEVMPVLAVAHGEGP 64
           SPPIALLLAAGRGSRF A EEKLLQ F HHDGRPG+VATA AAALLEVMPVLAV  G G 
Sbjct: 6   SPPIALLLAAGRGSRFDAREEKLLQAFPHHDGRPGMVATAAAAALLEVMPVLAVVPGPGA 65

Query: 65  LADALRALGCTVCMTGKDEPREMSASLRCGLQQSADASAWLVALADMPRVQPDTVRRLRD 124
           LA+ALRA GC VCM      REMSASLRCG+Q SA AS WLVALADMP V   T+  LRD
Sbjct: 66  LAEALRAQGCAVCMPAPASSREMSASLRCGVQHSAQASGWLVALADMPCVDLSTLCLLRD 125

Query: 125 ALAAGASMVVPVMQGRRGNPVGFAQSHLPALLSLQGDRGARALLESPALVEIAVEDAGIF 184
           ALAAGA +V PVMQGRRG+PVGF ++HL ALL+L GD+GARALL++  + E+ V D GIF
Sbjct: 126 ALAAGAPIVAPVMQGRRGHPVGFGRAHLDALLALHGDQGARALLKTHPVTELEVMDEGIF 185

Query: 185 SDVDTPEDLQRLR 197
           +DVDT EDL+R+R
Sbjct: 186 ADVDTAEDLRRVR 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 662,407
Number of extensions: 27104
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,236,335
Effective search space: 148360200
Effective search space used: 148360200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)