BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0037.p
         (261 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310652|ref|YP_003774744.1| oxidoreductase, molybdopterin-b...   501   e-143
gi|300312355|ref|YP_003776447.1| sulfite oxidase [Herbaspirillum...    81   9e-17

>gi|300310652|ref|YP_003774744.1| oxidoreductase,
           molybdopterin-binding protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score =  501 bits (1291), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/261 (93%), Positives = 249/261 (95%), Gaps = 3/261 (1%)

Query: 1   MKDKEDIKPPRPEKAGKILLADHRPALLNVQRRLMLRSALSVGALSMLSGCDLQDNDSVD 60
           MKDK+D   P+ EK   ILLADHRPAL+ VQRRLMLRSALS+GALSMLSGCDLQDNDSVD
Sbjct: 1   MKDKDDKHAPKTEK---ILLADHRPALVQVQRRLMLRSALSLGALSMLSGCDLQDNDSVD 57

Query: 61  KVLWAMSRWNDRVQALLFRSQKLAPTYAASQITNPFPFNAFYDEFNAPDIDGSDWKLEVS 120
           KVLWAMSRWNDRVQALLFRS KLAPTYAASQIT+PFPFNAFYDEFNAPDIDGSDWKLEVS
Sbjct: 58  KVLWAMSRWNDRVQALLFRSHKLAPTYAASQITHPFPFNAFYDEFNAPDIDGSDWKLEVS 117

Query: 121 GLVSDKRSWNLERLRALPQAAQITRHICIEGWSAIGQWSGVPLSLFLQAVGADLTAKYVG 180
           GLVSDKRSW LERLRALPQA QITRHICIEGWSAIGQWSGVPL LFLQAVGADLTA+YVG
Sbjct: 118 GLVSDKRSWTLERLRALPQAGQITRHICIEGWSAIGQWSGVPLRLFLQAVGADLTARYVG 177

Query: 181 FKCADRYYSSLDMPTALHPQTILALDFGKEALPTQYGYPLKVRVPTKLGFKNPKHVVAIF 240
           FKCADRYYSSLDMPTALHPQTILALDFGKEALPTQYGYPLKVRVPTKLGFKNPKHVVAIF
Sbjct: 178 FKCADRYYSSLDMPTALHPQTILALDFGKEALPTQYGYPLKVRVPTKLGFKNPKHVVAIF 237

Query: 241 VSNQNPGGYWEDQGYNWFSGI 261
           VSNQNPGGYWEDQGYNWFSGI
Sbjct: 238 VSNQNPGGYWEDQGYNWFSGI 258


>gi|300312355|ref|YP_003776447.1| sulfite oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 322

 Score = 81.3 bits (199), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 85/192 (44%), Gaps = 29/192 (15%)

Query: 98  FNAFYDEF---------NAPDIDGSDWKLEVSGLVSDKRSWNLERLRAL-PQAAQITRHI 147
           +N FY EF         NA  +  S W +++ G V    + +L+ L  L P   +I R  
Sbjct: 81  YNNFY-EFGTDKADPAKNAGTLKTSPWTIDIEGEVKKPFTLDLDALTKLAPLEERIYRLR 139

Query: 148 CIEGWSAIGQWSGVPLSLFLQAVGADLTAKYVGF-KCADR--------------YYSSLD 192
           C+EGWS +  W G  LS  ++       AKYV F   AD+              Y   L 
Sbjct: 140 CVEGWSMVIPWIGYSLSALIKKAEPTGNAKYVEFVTLADKKQMPGLSDPILNWPYREGLR 199

Query: 193 MPTALHPQTILALDFGKEALPTQYGYPLKVRVPTKLGFKNPKHVVAIFVSNQNPGGYWE- 251
           +  A HP T+L L    E LP Q G P+++ VP K GFK+ K +V I      P   W  
Sbjct: 200 LDEANHPLTLLTLGMYGEVLPNQNGAPVRIIVPWKYGFKSAKSIVKIRFVKDEPKTAWNL 259

Query: 252 --DQGYNWFSGI 261
              Q Y ++S +
Sbjct: 260 YAPQEYGFYSNV 271


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 898,278
Number of extensions: 37357
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 2
Length of query: 261
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 178
Effective length of database: 1,226,865
Effective search space: 218381970
Effective search space used: 218381970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)