BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0031.p
         (302 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310269|ref|YP_003774361.1| quinohemoprotein alcohol dehydr...   205   3e-54
gi|300310267|ref|YP_003774359.1| quinohemoprotein alcohol dehydr...   200   1e-52

>gi|300310269|ref|YP_003774361.1| quinohemoprotein alcohol
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 316

 Score =  205 bits (522), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 173/301 (57%), Gaps = 6/301 (1%)

Query: 4   LHHRVRPLRRALLAAASALTFSAGCAAAAEIATDPGDYAALPAGANLALLYGQHTERNSN 63
           L+ R+   R+ L  AA +L      AA A I  D GD+   P G  + LLY QH ER+S 
Sbjct: 20  LNSRMPAARKMLALAALSLVVMFPVAAHA-IDVDIGDFVPAPGGTTVGLLYYQHAERDSL 78

Query: 64  YANGNRTAGDFRLVTDIGLARFVHFMQVGDYTIDPQIIIPFGKVDLQTAFGPLKPVSASG 123
           Y  G + A + RLV+DIG+AR VH+  +G     PQ+++PFG++D      PL     SG
Sbjct: 79  YTKGQKAALNPRLVSDIGIARLVHYTSIGGLAFAPQVLLPFGRLDAGRDTAPLG--QTSG 136

Query: 124 VGDPLVGGTLWLLNQQQQQRWLGVSAFVAVPAGNYDGSKGPVNVGENRWKGIFQLGYVTA 183
           VGD ++    W LN    + +LG++ ++ +P G+YD ++  +N+GE+RWK   Q+G+V  
Sbjct: 137 VGDIILAAPFWPLNDAASRTYLGIAPYLYLPTGSYDRNRA-LNLGEHRWKFDLQVGFVKG 195

Query: 184 LPANFMLDVIGEYAVYGDNTNF--LGLKREQDASYGLQTHLRYMFSPTTSLALSWYQDFG 241
               + LD+ G+   YG N ++   G  + Q + +  Q +LRY F+P  ++ +   Q++G
Sbjct: 196 FTEKWYLDLTGDVMFYGKNNDYGSNGATQRQKSLFQGQAYLRYQFTPVANIFVGLSQNWG 255

Query: 242 GATRLNGVAQNDRMNNGRLQAGFSTFVAPTVQLMVQYGQSIKVENGAKESNRINLRIAKV 301
           G TR++GVA ND     +   G S F+ P  QL+   G+ + V+NG KE+ RINLR+ +V
Sbjct: 256 GETRVDGVASNDEARQRKASIGGSWFIGPKTQLLGAIGRDLYVQNGFKENARINLRLLRV 315

Query: 302 F 302
           F
Sbjct: 316 F 316


>gi|300310267|ref|YP_003774359.1| quinohemoprotein alcohol
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score =  200 bits (509), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/299 (37%), Positives = 169/299 (56%), Gaps = 8/299 (2%)

Query: 7   RVRPLRRALLAAASALTFSAGCAAAAEIATDPGDYAALPAGANLALLYGQHTERNSNYAN 66
           R   LR  L + A AL      A A  I  DP DY   PAG    LLY QH ER+++Y++
Sbjct: 10  RFASLRTVLFSIAVALAMGV-MADACAIDVDPADYVPAPAGTTAGLLYQQHAERDASYSS 68

Query: 67  GNRTAGDFRLVTDIGLARFVHFMQVGDYTIDPQIIIPFGKVDLQTAFGPLKPVSASGVGD 126
           GNR  G+  L +D+ + R VH+M +G YT+ PQ+++PF  +        L   S + +GD
Sbjct: 69  GNRNPGNPLLTSDVTILRLVHYMNIGGYTVGPQVLLPFASLRSGRDIKALG--SENALGD 126

Query: 127 PLVGGTLWLLNQQQQQRWLGVSAFVAVPAGNYDGSKGPVNVGENRWKGIFQLGYVTALPA 186
            ++   +WL+N   +  +  V+ ++ +P G+Y  S+  +NVGENRWK   Q G V  +  
Sbjct: 127 LILAAPVWLVNDPAKSTFFAVAPYLYLPTGSYSDSRA-LNVGENRWKFDLQAGLVQRISG 185

Query: 187 NFMLDVIGEYAVYGDNTNFLGLKR---EQDASYGLQTHLRYMFSPTTSLALSWYQDFGGA 243
              LD+ G+  V+G N ++ G  R    Q   Y LQ++LRY FS TT+      + +GG 
Sbjct: 186 PLYLDLTGDVMVFGKNNDY-GSGRGSMRQAPLYQLQSYLRYQFSATTNATAGLSRTWGGE 244

Query: 244 TRLNGVAQNDRMNNGRLQAGFSTFVAPTVQLMVQYGQSIKVENGAKESNRINLRIAKVF 302
           TR+NGV  +D+ N  ++  G STFVA   Q+M   G+ + V+NG KE+ R+NLR+ ++F
Sbjct: 245 TRVNGVDNHDQPNQLKISFGGSTFVAAKTQIMGSIGRDLSVDNGFKENFRLNLRLLQIF 303


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 880,183
Number of extensions: 38598
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 302
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,217,395
Effective search space: 264174715
Effective search space used: 264174715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)