BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0029.p
         (176 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311906|ref|YP_003775998.1| L-lactate dehydrogenase [Herbas...   177   3e-46
gi|300309586|ref|YP_003773678.1| FMN-dependent L-lactate dehydro...   110   5e-26

>gi|300311906|ref|YP_003775998.1| L-lactate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  177 bits (450), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 118/174 (67%)

Query: 2   IISSTHDYREAARRRLPRFLFDYIDGGAYDEHTLARNSLDLRQLALRQRVLKEVGEVDLS 61
           +++   D+R  A++R+P+  +DY D G+Y E T   NS DL  L LRQRV   V E    
Sbjct: 3   VMTCVEDFRLLAKKRVPKAFYDYADSGSYTESTYRANSKDLAALKLRQRVAINVDERSTR 62

Query: 62  TTLLGQSLAMPLALSPVGLTGMYARRGEVQAARAAEKAGIPFTLSTVSVCPIEEVQQGVT 121
           TT++G  + MP+A++P GLTGM    GE+  A AAEK GIPFTLST+S+C IE+V    T
Sbjct: 63  TTMIGHDVTMPVAIAPTGLTGMQWANGEMLGAIAAEKFGIPFTLSTMSICSIEDVASVTT 122

Query: 122 RPIWFQLYVLKDRGFMKNVLDRAWAAGVRTLVFTVDMPVPGARYRDRHSGMSGP 175
           +P WFQLYV++DRGF+K++++RA AA    LV T+D+ + G R++D  +GMS P
Sbjct: 123 KPFWFQLYVMRDRGFVKSLIERAKAAKCSALVLTLDLQILGQRHKDLKNGMSVP 176


>gi|300309586|ref|YP_003773678.1| FMN-dependent L-lactate
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  110 bits (276), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 90/163 (55%)

Query: 5   STHDYREAARRRLPRFLFDYIDGGAYDEHTLARNSLDLRQLALRQRVLKEVGEVDLSTTL 64
           S  + R  AR+R+P F F+Y++GGA +E +L  N     ++    R L +V        L
Sbjct: 36  SIEELRAMARKRVPNFCFEYVEGGAEEEISLRHNREVFTRIGFLPRTLVDVSVRRQGRRL 95

Query: 65  LGQSLAMPLALSPVGLTGMYARRGEVQAARAAEKAGIPFTLSTVSVCPIEEVQQGVTRPI 124
            GQ +A P  + P G +G+ AR G+V  A AA  AG+PF L+ VS   +EEV +     +
Sbjct: 96  FGQDIASPFLIGPTGFSGLLAREGDVAMASAAASAGVPFVLTNVSTTSLEEVVRRSGAQV 155

Query: 125 WFQLYVLKDRGFMKNVLDRAWAAGVRTLVFTVDMPVPGARYRD 167
           W Q+Y+ +DR F+ +V  RA AAG+  LV T D  V G R  D
Sbjct: 156 WQQVYLYRDRAFVASVAQRAQAAGIGVLVLTTDSAVYGKREWD 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 557,936
Number of extensions: 21914
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,245,805
Effective search space: 120843085
Effective search space used: 120843085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)