BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0023.p
         (724 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309654|ref|YP_003773746.1| sulfate permease family protein...    74   5e-14

>gi|300309654|ref|YP_003773746.1| sulfate permease family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 501

 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 144/320 (45%), Gaps = 25/320 (7%)

Query: 121 LVGLALMALGALRRGNLVLFVPFPVVGGFLAGTGYLLWSGA---FTVLTGHPLGLDALRT 177
           L GL ++A GALR G LV  VP PV+ GF+ G   ++       F + T    G   L+ 
Sbjct: 103 LSGLIMLAFGALRLGKLVRMVPHPVMLGFVNGLAIVIALSQLEHFRIATAA--GTQWLQ- 159

Query: 178 GIDLHWQELLPVAIVVIGMLGLPGRKFDHPLALPVSLALASAAFYGALAASGL---SLAQ 234
           G  L     L +A ++I  L LP      P AL   L +    +     ASGL   +LA 
Sbjct: 160 GSALWVMIALTLATMLIVWL-LPRVTKAVPPALAAILGVGLVTY-----ASGLHTRTLAD 213

Query: 235 ARALGWMFAPLSLGHVQLPVQVSWSLVHWDILWRHYGELLALIAVTTLAILLNATGVSLA 294
              +     PL L  V L ++          +   Y  L+A++ +    +  N T    A
Sbjct: 214 MAQIAGGLPPLHLPSVPLTLETLR-------IIGPYAVLMAIVGLLETLLTFNLTDEITA 266

Query: 295 TRREVDFNRELRSAGLANMLSGCFGGVVGCHSLSRTLLNYRFGSRDRVATLLAAVLCLVC 354
           TR +   NRE  + G AN++SG FGG+ GC  + +T++N   G R R++ ++A V+ L+ 
Sbjct: 267 TRGQP--NRECLALGAANIVSGLFGGMGGCAMIGQTMINLGSGGRSRLSGVVAGVMILLF 324

Query: 355 ALFFIPLLGYFPKPVLAGLLIGLGGGLLNEWLVRSR-RLARGDYFLIVLIVAVVACYGFV 413
            LF  P +   P   LAG++  +         +R   ++ R D  +I+ +  +       
Sbjct: 325 ILFLSPAIERIPLAALAGVMFVVAQETFAWGSLRVLGKVPRSDALVIIAVTVITVLTDLA 384

Query: 414 TGVALGVVVACVLFVLDYGR 433
             V  G+V+A + F   + R
Sbjct: 385 VAVLCGIVIAALNFAWQHAR 404


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,707,701
Number of extensions: 58058
Number of successful extensions: 307
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 632
Effective length of database: 1,184,250
Effective search space: 748446000
Effective search space used: 748446000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 134 (56.2 bits)