BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0019.p (270 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 528 e-151 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 209 2e-55 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 187 1e-48 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 182 2e-47 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 180 1e-46 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 528 bits (1360), Expect = e-151, Method: Compositional matrix adjust. Identities = 254/270 (94%), Positives = 266/270 (98%) Query: 1 MDNINGKFIDIHGVEMVFHTRKGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAG 60 MDNINGKFIDIHGVEM+FHT+KGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAG Sbjct: 3 MDNINGKFIDIHGVEMLFHTKKGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAG 62 Query: 61 LLKPSDGVLLCANREIGGPAPERAVVFQNHSLLPWLTCYENIYLGVERVFGASENRTQLR 120 LLKPS+GVLLCANREIGGPAPERAVVFQNHSLLPWL+CYENIYLGVERVFGA+ENRTQLR Sbjct: 63 LLKPSEGVLLCANREIGGPAPERAVVFQNHSLLPWLSCYENIYLGVERVFGATENRTQLR 122 Query: 121 DRTRAALALVGLTAAESKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAH 180 DRTRAALALVGL+AAE+KRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAH Sbjct: 123 DRTRAALALVGLSAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAH 182 Query: 181 LQDELLKIVAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEIVEVKLPRPRDRVA 240 LQDELLKIVAKT+STVVMVTHDVDEAVLLSDRIVMMTNGPAATIGE++EVKL RPRDRV Sbjct: 183 LQDELLKIVAKTDSTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVKLARPRDRVV 242 Query: 241 LAQDAQYGAYRTAVLEFLYRKQAHPARDAA 270 LAQD +YG YRTAVLEFLYRKQAHPAR+AA Sbjct: 243 LAQDPEYGQYRTAVLEFLYRKQAHPAREAA 272 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 209 bits (532), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 111/254 (43%), Positives = 160/254 (62%), Gaps = 8/254 (3%) Query: 9 IDIHGVEMVFHTRKGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSDGV 68 I I GV VF T AL++INL + G+FV L+G SGCGKSTLLN IAG PS G Sbjct: 10 IRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQ 69 Query: 69 LLCANREIGGPAPERAVVFQNHSLLPWLTCYENIYLGVERVFGASENRTQLRDRTRAALA 128 +L ++ + P P+R +VFQ ++L PW+T +N+ G+E + G + ++ R L Sbjct: 70 ILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLE-IKGTP--KAEIHQRVTQLLD 126 Query: 129 LVGLTAAESKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKI 188 +GL ++ P ++SGGM+QRV IAR LA++ ++LMDEPFGALDALTR +LQDELL+I Sbjct: 127 KLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRI 186 Query: 189 VAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEIVEVKLPRPRDRVALAQDAQYG 248 + T+V VTH ++EA+ L+DRIV+MT P T+ + V LPR RD D ++ Sbjct: 187 WDEFRKTIVFVTHSIEEAIYLADRIVVMTYRP-GTVKRDMLVNLPRLRD----PADPEFN 241 Query: 249 AYRTAVLEFLYRKQ 262 A + + + + +Q Sbjct: 242 ALKRELGQLVMEEQ 255 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 187 bits (474), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 95/205 (46%), Positives = 130/205 (63%), Gaps = 3/205 (1%) Query: 23 GVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSDGVLLCANREIGGPAPE 82 G H + E +A GE V L+G SGCGKSTLL++ AGL KPS G + + I GP PE Sbjct: 13 GDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPE 72 Query: 83 RAVVFQNHSLLPWLTCYENIYLGVERVFGASENRTQLRDRTRAALALVGLTAAESKRPNE 142 R ++FQ ++L PWLT +N+ L +E S ++ + ++ R L V L E P++ Sbjct: 73 RTLMFQENALYPWLTLQQNVALALEF---QSVDKKKAAEQARVWLENVKLKGFEHYYPHQ 129 Query: 143 ISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTESTVVMVTHD 202 +SGGM+QR +ARA +PK LL+DEPFGALDALTR LQD L ++ + TVV+VTHD Sbjct: 130 VSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHD 189 Query: 203 VDEAVLLSDRIVMMTNGPAATIGEI 227 VDEA+ L+DRI + + PA + E Sbjct: 190 VDEALFLADRIFVFSPRPAKVLKEF 214 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 182 bits (463), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 109/222 (49%), Positives = 136/222 (61%), Gaps = 5/222 (2%) Query: 31 INLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSDGVLLCANREIGGPAPERAVVFQN- 89 I+L + GEFV L+G SGCGKSTLLN IAG S G + + + GP +R VVFQ+ Sbjct: 25 IDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQDVS-GEISVDGKRVKGPGLDRGVVFQSS 83 Query: 90 HSLLPWLTCYENIYLGVERVFGASENRTQLRDRTRAALALVGLTAAESKRPNEISGGMKQ 149 +L PWL+ EN+ G+ ++ G + + ++LVGL A K P E+SGGM+Q Sbjct: 84 EALFPWLSVRENVEYGL-KLRGVASAERRAA--AERYVSLVGLKHAIDKFPAELSGGMRQ 140 Query: 150 RVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTESTVVMVTHDVDEAVLL 209 R IAR L EP V+LMDEPFGALDA TR LQ EL +I T T+V VTHD+ EA+LL Sbjct: 141 RAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILL 200 Query: 210 SDRIVMMTNGPAATIGEIVEVKLPRPRDRVALAQDAQYGAYR 251 +DR+V MT GP A I I EV LP PRD A A Y R Sbjct: 201 ADRVVTMTAGPRAHIKTIEEVHLPHPRDPADPACMALYARIR 242 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 180 bits (456), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 92/217 (42%), Positives = 134/217 (61%), Gaps = 4/217 (1%) Query: 9 IDIHGVEMVFHTR-KGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSDG 67 + + + F R K HAL ++L + G FV +G SGCGKSTLLN +AG L S+G Sbjct: 2 LKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEG 61 Query: 68 VLLCANREIGGPAPERAVVFQNHSLLPWLTCYENIYLGVERVFGASENRTQLRDRTRAAL 127 + + + GP ER VVFQ SLLPW + +N+ LG++ A +++ R+R + L Sbjct: 62 RISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKF---AGVSKSDSRERAQELL 118 Query: 128 ALVGLTAAESKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLK 187 LVGL P E+SGGM+QRVG+ARALA PK+LLMDEPFGALD++TR +Q+ L+ Sbjct: 119 RLVGLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVS 178 Query: 188 IVAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATI 224 + A+T V +TH ++EA+ L +++M+ P + Sbjct: 179 VWARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIV 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 820,451 Number of extensions: 32680 Number of successful extensions: 532 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 319 Number of HSP's successfully gapped: 143 Length of query: 270 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 186 Effective length of database: 1,222,130 Effective search space: 227316180 Effective search space used: 227316180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)