BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0018.p (222 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310541|ref|YP_003774633.1| nitrate transporter permease [H... 433 e-123 gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 105 2e-24 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 96 2e-21 gi|300312619|ref|YP_003776711.1| ABC transporter permease [Herba... 84 1e-17 gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate A... 77 1e-15 >gi|300310541|ref|YP_003774633.1| nitrate transporter permease [Herbaspirillum seropedicae SmR1] Length = 307 Score = 433 bits (1114), Expect = e-123, Method: Compositional matrix adjust. Identities = 219/222 (98%), Positives = 221/222 (99%) Query: 1 VTLKEAGVMFSDPFYRNSPNDQGIGWNVLASLQRVGMGFGLAALVGIPLGFAIGRVEFLS 60 VTLKEAGVMF+DPFYRNSPNDQGIGWNVLASLQRVG GFGLAALVGIPLGFAIGRVEFL+ Sbjct: 86 VTLKEAGVMFADPFYRNSPNDQGIGWNVLASLQRVGTGFGLAALVGIPLGFAIGRVEFLA 145 Query: 61 RMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIWSIFICSIWPMIINTAVGVQRVPQDY 120 RMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIWSIFICSIWPMIINTAVGVQRVPQDY Sbjct: 146 RMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIWSIFICSIWPMIINTAVGVQRVPQDY 205 Query: 121 MNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSIGTAWLVIVAAEMLTGGVGIGFWVWD 180 MNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSIGTAWLVIVAAEMLTGGVGIGFWVWD Sbjct: 206 MNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSIGTAWLVIVAAEMLTGGVGIGFWVWD 265 Query: 181 EWNNLNVPHIIIAIVVIGVVGLVLEQLLVALAKAFTYEQVNN 222 EWNNLNVPHIIIAIVVIGVVGLVLEQLLVALAKAFTYEQVNN Sbjct: 266 EWNNLNVPHIIIAIVVIGVVGLVLEQLLVALAKAFTYEQVNN 307 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 105 bits (263), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 110/189 (58%) Query: 20 NDQGIGWNVLASLQRVGMGFGLAALVGIPLGFAIGRVEFLSRMFGPIISLLRPVSPLAWL 79 +D + +VLAS R+ G+G ++G+PLG +GR E + ++ P I R + P+A++ Sbjct: 56 SDGTLQQSVLASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFV 115 Query: 80 PIGLLVFKSANPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKIL 139 + ++ + I IF +++ + +NT GVQ V + A L +WK+L+ ++ Sbjct: 116 TLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVI 175 Query: 140 FPSVLPYMLTGVRLSIGTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGV 199 PS +P+M+TG R+++G ++L +V+AE+++ G+G +W N + + I+ +G+ Sbjct: 176 LPSTVPFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGI 235 Query: 200 VGLVLEQLL 208 +G + +++L Sbjct: 236 LGYLFDRVL 244 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 110/179 (61%) Query: 27 NVLASLQRVGMGFGLAALVGIPLGFAIGRVEFLSRMFGPIISLLRPVSPLAWLPIGLLVF 86 + + SL RV GF + A + +PLG +G + + + + ++RP+ P+A++P+ +L F Sbjct: 76 DAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWF 135 Query: 87 KSANPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPY 146 NP A++ I + + +P+++NT GV++V Y+ AR L S+ + +++ P+ +PY Sbjct: 136 GLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPY 195 Query: 147 MLTGVRLSIGTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLVLE 205 +L+GVR+ IGTA++V++ AEM+ G+GF + + II ++ IG++GL ++ Sbjct: 196 ILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAID 254 >gi|300312619|ref|YP_003776711.1| ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 257 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 100/180 (55%), Gaps = 1/180 (0%) Query: 31 SLQRVGMGFGLAALVGIPLGFAIGRVEFLSRMFGPIISLLRPVSPLAWLPIGLLVFKSAN 90 SL R+GMG+G A ++GI G + F + I +L+ + +AW+P+ L++ N Sbjct: 65 SLYRLGMGYGSALVLGIGFGLVGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILMGFGN 124 Query: 91 PAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTG 150 + + I + +P ++ + V Q +++ ARV+ S +L ++ P+V+P ++TG Sbjct: 125 LPIVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPELITG 184 Query: 151 VRLSIGTAWLVIVAAEMLTG-GVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLVLEQLLV 209 +L+ G AW +++AEML G G G+G + ++ ++ I+ I ++ +++Q+++ Sbjct: 185 AQLAFGNAWRALISAEMLVGFGKGLGRTLAYSGETADMVGVMANILTIAILAALIDQVIL 244 >gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 259 Score = 77.0 bits (188), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 91/179 (50%) Query: 38 GFGLAALVGIPLGFAIGRVEFLSRMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIWSI 97 GF +A +VG+ LGF IG L P+++ + A++P+ ++ F AI + Sbjct: 74 GFAIAVVVGVTLGFVIGSSPMLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGPAILTA 133 Query: 98 FICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSIGT 157 F+ S +P+++N A G+ + + +V RVL +L K+ P +PY ++++I Sbjct: 134 FLISFFPIMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSMPYFFASLKVAITL 193 Query: 158 AWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLVLEQLLVALAKAFT 216 A++ +EM GIG+ + +++ +P +VVIG + + + +L + K T Sbjct: 194 AFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAIIEKRTT 252 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.143 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 704,675 Number of extensions: 30306 Number of successful extensions: 185 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 16 Length of query: 222 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 140 Effective length of database: 1,231,600 Effective search space: 172424000 Effective search space used: 172424000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)